Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2933 ATGGCACACCCCCCTAAAGGGGACCCCATCCCGGAGAACCACGGTGATGAGAAGGACGCCGGAGCTGCTTTTGTCCTCCAATCAAAAGGTCAATGGTGGCACGCGGGTTTCCATTTAACGACGGCGATTGTGGGTCCAACCATACTGACGCTGCCATACACGTTCAGAGGGTTGGGGTGGGAGCTGGGTCTCTTTTGCCTAACGGTGATGGGAGTGGTCACATTCTACGCTTACTACCTCATGTCCATGGTGCTTGATCACTGTGAGAAAGCCGGTCGTCGCCATATCCGTTTTCGTGAACTCGCCGCTGACGTTTTGGGGTCGGGATGGATGTTCTATTTTGTAATCTTAATACAAACGGCAATCAACTGCGGGGTTGGCGTAGGAGCAATTTTATTTGCAGGCCAATGCCTTCAGATCCTGTATTCCAGTCTTTCACCACACGGATCCCTGAAATTGTATGAGTTTATAGCAATGATGACAGTGATAATGATAGTTTTATCTCAGCTTCCCACTTTCCATTCCCTGAGACACATCAACTTGTGTTCGCTGTTTCTCAGCCTGGGCTACACAGCTCTGGTGGTTGGTGCCTGCATTTATGCGGGTGCATCAAAGAACGCCCCTCCAAAGGACTATTCCTTAGAACATAATAAGTCTGCAAGGGCTTTCAGTGCCTTCACTTCCATCTCCATAATTGCAGCAATATTTGGGAATGGCATATTACCTGAGATACAAGCAACTCTTGCGCCTCCTGCCACTGGGAAGATGGTAAAAGGACTTGGCATGTGCTATGCTGTAATTGGCGTGACATTCTACTCAACTGCAGTTTCTGGATATTGGGCATTTGGAAACAAGTCTAGTTCAAACATTTTCAAGAGTCTAATGCCAGATGATGGACCTTCTTTGGCTCCAACTTGGGTCCTTGGCCTTGCAGTCATCTTTGTTCTTCTCCAGCTCTTTGCCATTGGCCTGGTTTATTCTCAAGTGGCTTATGAGATAATGGAGAAGAAGTCAGCTGATGCGAATCAGGGGATGTTTTCCAAAAGAAATCTTGTTCCTCGTATAATTCTTCGAACAATTTACATGGTAATATGTGGGTTTGTGGCAGCTATGCTGCCATTTTTTGGAGACATCAATGGGGTGGTCGGTGCTATTGGTTTCATCCCTCTGGATTTCGTTCTGCCTATGCTTCTATACAACATGACATACAAGCCTCCAAAATCATCCTTCTCTTACTGGATTAACACCTCAATTATGGTGGTCTTCACGGGTGTTGGAATAATGGGCGCATTCTCTTCTATAAGGAAATTGGTTCTTGATGCCAACCAATTTAAGCTCTTCGACAATGATGTTGTTGATTGA 1362 0.4611 MAHPPKGDPIPENHGDEKDAGAAFVLQSKGQWWHAGFHLTTAIVGPTILTLPYTFRGLGWELGLFCLTVMGVVTFYAYYLMSMVLDHCEKAGRRHIRFRELAADVLGSGWMFYFVILIQTAINCGVGVGAILFAGQCLQILYSSLSPHGSLKLYEFIAMMTVIMIVLSQLPTFHSLRHINLCSLFLSLGYTALVVGACIYAGASKNAPPKDYSLEHNKSARAFSAFTSISIIAAIFGNGILPEIQATLAPPATGKMVKGLGMCYAVIGVTFYSTAVSGYWAFGNKSSSNIFKSLMPDDGPSLAPTWVLGLAVIFVLLQLFAIGLVYSQVAYEIMEKKSADANQGMFSKRNLVPRIILRTIYMVICGFVAAMLPFFGDINGVVGAIGFIPLDFVLPMLLYNMTYKPPKSSFSYWINTSIMVVFTGVGIMGAFSSIRKLVLDANQFKLFDNDVVD 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2933 453 PANTHER OS05G0424000 PROTEIN-RELATED 2 447 - -
Ssu2g2933 453 PANTHER GABA TRANSPORTER 2 ISOFORM X1-RELATED 2 447 - -
Ssu2g2933 453 Pfam Transmembrane amino acid transporter protein 29 437 IPR013057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2933 Ssu-Chr2 90708412 90712872 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g2933 1 453 Organic Solute Cotransporters AT5G41800 79.470 0.0 741
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2933 - - gmx:100812284 783.867
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2933 2 90708412 90712872 Ssu2g2933 2 90708412 90712872 ECH