Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2932 ATGGCGTCCGAAGCAAAGGTTGCCGGTGAGGGTACGAAACCTCCAACTCACGAGGTTCTCAGCATCTGCAAGTCCCTCGTCGCCGGTGGAGTTGCCGGTGGAGTGTCACGAACTGCTGTAGCTCCGCTGGAGAGACTGAAGATTCTGCTGCAGGTTCAAAATCGTCATAGTATAAAATACAACGGAACAATTCAAGGCTTACAATATATATGGAAAACTGAGGGTTTTAGAGGAATGTTTAAAGGAAACGGAACTAATTGTGCTCGTATTGTCCCAAATTCAGCAGTGAAGTTCTTTAGCTATGAGCAAGCTTCCAAGGGTATTTTATGGCTCTACCAGCAGCAACCTGGAAATGAAGAAGCTCAGCTCACTCCTATCCTGCGTCTTGGAGCTGGTGCATGCGCGGGAATCATTGCCATGTCTGCAACTTATCCTATGGACCTGGTGCGAGGAAGGCTAACCGTCCAGACAGAAGCATCTCCTCGTCAATACAGAGGAATTTTTCAAGCTCTTTCAACAGTCTTCCGGGAAGAAGGCCCTCGAGCTTTGTATAAAGGCTGGCTACCTTCAGTCATAGGAGTTATACCGTATGTGGGTCTTAATTTCTCTGTATATGAATCTCTCAAAGACTGGTTGATTCGATCTAAACCATTTGGAATAGCTCAAGACTCTGAGCTAAGTGTGACCACAAGGCTTGCATGTGGAGCTGCTGCTGGAACTGTTGGCCAGACTGTGGCTTACCCCCTTGATGTTATTCGCCGAAGAATGCAAATGGTGGGCTGGAAAGATGCTGCTTCAGTAGTCGCTGGTGAGGGGAAGAGCAAAATTGAGTATACCGGCATGGTTGATGCATTCAGGAAAACTGTACAGCATGAAGGAGTTGGAGCGTTATACAAGGGCTTAGTTCCCAATTCAGTGAAGGTGGTCCCTTCTATAGCTATTGCTTTCGTGACATACGAGATGGTCAAGGACATTCTTGGAGTAGAAATGAGAATATCTGACTGA 1005 0.4677 MASEAKVAGEGTKPPTHEVLSICKSLVAGGVAGGVSRTAVAPLERLKILLQVQNRHSIKYNGTIQGLQYIWKTEGFRGMFKGNGTNCARIVPNSAVKFFSYEQASKGILWLYQQQPGNEEAQLTPILRLGAGACAGIIAMSATYPMDLVRGRLTVQTEASPRQYRGIFQALSTVFREEGPRALYKGWLPSVIGVIPYVGLNFSVYESLKDWLIRSKPFGIAQDSELSVTTRLACGAAAGTVGQTVAYPLDVIRRRMQMVGWKDAASVVAGEGKSKIEYTGMVDAFRKTVQHEGVGALYKGLVPNSVKVVPSIAIAFVTYEMVKDILGVEMRISD 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2932 334 ProSiteProfiles Solute carrier (Solcar) repeat profile. 123 211 IPR018108 -
Ssu2g2932 334 Gene3D Mitochondrial carrier domain 16 328 IPR023395 -
Ssu2g2932 334 SUPERFAMILY Mitochondrial carrier 18 321 IPR023395 -
Ssu2g2932 334 PRINTS Mitochondrial carrier protein signature 184 202 IPR002067 GO:0055085
Ssu2g2932 334 PRINTS Mitochondrial carrier protein signature 38 52 IPR002067 GO:0055085
Ssu2g2932 334 PRINTS Mitochondrial carrier protein signature 235 257 IPR002067 GO:0055085
Ssu2g2932 334 PRINTS Mitochondrial carrier protein signature 82 102 IPR002067 GO:0055085
Ssu2g2932 334 PRINTS Mitochondrial carrier protein signature 138 156 IPR002067 GO:0055085
Ssu2g2932 334 PRINTS Mitochondrial carrier protein signature 25 38 IPR002067 GO:0055085
Ssu2g2932 334 Pfam Mitochondrial carrier protein 124 214 IPR018108 -
Ssu2g2932 334 Pfam Mitochondrial carrier protein 225 326 IPR018108 -
Ssu2g2932 334 Pfam Mitochondrial carrier protein 20 106 IPR018108 -
Ssu2g2932 334 PANTHER MITOCHONDRIAL CARRIER PROTEIN-RELATED 8 329 - -
Ssu2g2932 334 ProSiteProfiles Solute carrier (Solcar) repeat profile. 20 107 IPR018108 -
Ssu2g2932 334 PANTHER SOLUTE CARRIER FAMILY 25 8 329 - -
Ssu2g2932 334 ProSiteProfiles Solute carrier (Solcar) repeat profile. 226 325 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2932 Ssu-Chr2 90692553 90696835 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g2932 26 329 EF-hand Containing Proteins AT5G51050 39.344 5.16e-67 216
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2932 K14684 - gmx:100784834 605.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2932 2 90692553 90696835 Ssu2g2932 2 90692553 90696835 ECH