Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2928 ATGTCTTCGTCGAAAGAAGCGGACCCAAGCCTGGGTTACCTCACTCGGAAGGACACGGAGGTGAAGCTTCCGCGGCCAACGAGGGTCAAGAACAAAACCCCCGCTCCAATCCAGATCACCGCCGAGCAGATTCTCCGCGAGGCTCGGGAGCGTCAAGAGGCCGAGATCCGCCCTCCCAAGCAGAAAATCACCGACTCCACCGAGCTCGGCGAGTACCGTCTCCGAAAGCGTAAGGAATTCGAGGACCTAATCCGGCGCGTTCGATGGAACGTAGGCGTGTGGATCAAGTACGCGCAGTGGGAGGAATCGCAGAAGGACTTCAAGCGCGCGCGCTCCGTTTGGGAGAGGGCCTTGGAGGTGGATTACAAGAACCACACGCTCTGGCTGAAGTACGCGGAGGTGGAGATGAAGAACAAGTTCATAAACCACGCGAGGAACGTTTGGGACCGCGCCGTGACGCTTTTGCCGAGGGTGGATCAGCTGTGGTACAAGTACATTCACATGGAGGAGGTGCTCGGCAATGTCGCCGGCGCGAGGCAGGTTTTCGAGCGGTGGATGAAGTGGACGCCGGACCAGCAGGGATGGCtctctttcatcaagtttgagCTGAGGTACAATGAAATTGAGCGAGCCAGAGGGATTTTCGAGCGGTTTGTTCAGTGCCACCCTAGGGTTGGGGCGTGGATTCGCTACGCCAAGTTTGAGATGAAGAATGGCGAGGTTGCGAAGGCGAGGAACGTTTACGAGAGAGCGGTGGATAAGCTCTCCGACGACGAGGAAGCGGAGCAGTTATTTGTTGCTTTTGCTGAGTTTGAGGAGAGGTGTAAGGAGACAGAGCGTGCAAGAGCTATATATAAGTTTTCTCTTGATCATATTCCCAAGGGAAGGGCAGAAGACTTGTATCGCAAGTTTGTGGCGTTTGAGAAGCAGTATGGGGACAGAGAAGGGATTGAGGATGCTATTGTTGGGAAGAGGAGGTTTCAGTATGAGGATGAAGTGAAGAAGAATCCGTTGAATTATGATTCCTGGTTTGACTACATTAGGTTGGAAGAGAGTGTTGGGGACAAAGAGAGAATCAGGGAGGTTTATGAGAGAGCTATAGCCAATGTTCCTCCGGCTGAGGAGAAGCGCTACTGGCAGCGCTATATCTATTTGTGGATTAATTATGCGCTCTATGAAGAGCTTGATGCTGGAGATGCGGAGCGAACAAGGGATGTATACAGGGAGTGTCTCAACCAGATACCTCACCATAAGTTCTCATTTGCAAAGATATGGCTTCTAGCAGCCCAGTTTGAAATACGTCAGCTGAATCTCAAGGCTGCTCGTCAAATATTAGGAAATGCCATTGGAAAGGCTCCTAAAGATAAGATTTTTAAGAAGTATATAGAGATAGAACTGCAGCTTGGTAATATAGATCGGTGCAGAAAACTGTATGAAAAATATCTAGAGTGGTCTCCTGAAAATTGTTATGCTTGGAGCAAGTATGCAGAATTGGAGAGATCTTTATCTGAGACTGATCGAGCTAGAGCAATTTTTGAGCTTGCAATCGCCCAACCAACATTGGACATGCCTGAGCTGTTGTGGAAGGCATACATCGACTTTGAAACTGCTGAGGGTGAATTTGAGAGAGCAAGAGCACTTTATGAAAGGCTTCTTGATCGAACAAAGCACTTGAAGGTATGGATAAGCTATGCGGAATTTGAGGCAACGGCTATGGATATGGACAGTTTAGATTTAACAGAAAATGAACAAAAGAAGCAATGCATTCAGCATGCTAGAAGGGTATTTGAGAAAGCTCTTAACTACTTTAGATCATCAGCTCCAGatttgaaagaagaaagggCAATGCTATTGGAGAAATGGCTCAACATGGAGGCTACGGCTGGAGAGCTTGGTGATGTTGGCTTAGTCCAGTCTAAGCTGCCCAAGAAGCTCAAGAAGAGAAGGCAAGTTGCCACTGAAGATGGTTCTACTAGAATTGAAGAATTCATCGACTATTTATTCCCTGAAGAAACCCAGACAACCAATCTCAAGATCTTGGAAGCTGCTTACAAATGGAAGAAACAAAAATTGTCTTCTGATGATGATTAA 2091 0.473 MSSSKEADPSLGYLTRKDTEVKLPRPTRVKNKTPAPIQITAEQILREARERQEAEIRPPKQKITDSTELGEYRLRKRKEFEDLIRRVRWNVGVWIKYAQWEESQKDFKRARSVWERALEVDYKNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEVLGNVAGARQVFERWMKWTPDQQGWLSFIKFELRYNEIERARGIFERFVQCHPRVGAWIRYAKFEMKNGEVAKARNVYERAVDKLSDDEEAEQLFVAFAEFEERCKETERARAIYKFSLDHIPKGRAEDLYRKFVAFEKQYGDREGIEDAIVGKRRFQYEDEVKKNPLNYDSWFDYIRLEESVGDKERIREVYERAIANVPPAEEKRYWQRYIYLWINYALYEELDAGDAERTRDVYRECLNQIPHHKFSFAKIWLLAAQFEIRQLNLKAARQILGNAIGKAPKDKIFKKYIEIELQLGNIDRCRKLYEKYLEWSPENCYAWSKYAELERSLSETDRARAIFELAIAQPTLDMPELLWKAYIDFETAEGEFERARALYERLLDRTKHLKVWISYAEFEATAMDMDSLDLTENEQKKQCIQHARRVFEKALNYFRSSAPDLKEERAMLLEKWLNMEATAGELGDVGLVQSKLPKKLKKRRQVATEDGSTRIEEFIDYLFPEETQTTNLKILEAAYKWKKQKLSSDDD 696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2928 696 SUPERFAMILY TPR-like 81 204 IPR011990 GO:0005515
Ssu2g2928 696 MobiDBLite consensus disorder prediction 11 27 - -
Ssu2g2928 696 Pfam HAT (Half-A-TPR) repeat 207 235 IPR003107 GO:0006396
Ssu2g2928 696 SUPERFAMILY TPR-like 526 627 IPR011990 GO:0005515
Ssu2g2928 696 SUPERFAMILY TPR-like 267 523 IPR011990 GO:0005515
Ssu2g2928 696 PANTHER PRE-MRNA SPLICING FACTOR 22 695 IPR045075 GO:0000398
Ssu2g2928 696 MobiDBLite consensus disorder prediction 1 36 - -
Ssu2g2928 696 Coils Coil 534 554 - -
Ssu2g2928 696 SUPERFAMILY TPR-like 194 263 IPR011990 GO:0005515
Ssu2g2928 696 SMART hat_new_1 173 204 IPR003107 GO:0006396
Ssu2g2928 696 SMART hat_new_1 276 310 IPR003107 GO:0006396
Ssu2g2928 696 SMART hat_new_1 354 388 IPR003107 GO:0006396
Ssu2g2928 696 SMART hat_new_1 239 274 IPR003107 GO:0006396
Ssu2g2928 696 SMART hat_new_1 503 537 IPR003107 GO:0006396
Ssu2g2928 696 SMART hat_new_1 105 137 IPR003107 GO:0006396
Ssu2g2928 696 SMART hat_new_1 436 467 IPR003107 GO:0006396
Ssu2g2928 696 SMART hat_new_1 206 237 IPR003107 GO:0006396
Ssu2g2928 696 SMART hat_new_1 539 570 IPR003107 GO:0006396
Ssu2g2928 696 SMART hat_new_1 139 171 IPR003107 GO:0006396
Ssu2g2928 696 SMART hat_new_1 320 352 IPR003107 GO:0006396
Ssu2g2928 696 SMART hat_new_1 469 501 IPR003107 GO:0006396
Ssu2g2928 696 SMART hat_new_1 587 620 IPR003107 GO:0006396
Ssu2g2928 696 SMART hat_new_1 71 103 IPR003107 GO:0006396
Ssu2g2928 696 SMART hat_new_1 398 434 IPR003107 GO:0006396
Ssu2g2928 696 Pfam Tetratricopeptide repeat 466 488 IPR019734 GO:0005515
Ssu2g2928 696 Gene3D Tetratricopeptide repeat domain 122 328 IPR011990 GO:0005515
Ssu2g2928 696 Gene3D Tetratricopeptide repeat domain 329 481 IPR011990 GO:0005515
Ssu2g2928 696 Gene3D Tetratricopeptide repeat domain 482 665 IPR011990 GO:0005515
Ssu2g2928 696 PANTHER - 22 695 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2928 Ssu-Chr2 90651482 90656717 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2928 K12869 - gmx:100791616 1358.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2928 2 90651482 90656717 Ssu2g2928 2 90651482 90656717 ECH