Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2894 ATGGGGTATTATTTGGTGGTCAGTGGTTTGTTCTTGTGGTGTGCCATGGTTAGTCACAATGGACTAGCCATGACGGATTGGAAGTTAATGAGTTCCTCAGCTAATTATGACTATGCAGATGCTCTTGGCAAAGCCATCTTGTTTTTTGAAGGACAACGCTCAGGGAAGTTGCCCACCAGCCAAAGAGTGAAGTGGAGGGGAGATTCGGCTCTCTCTGATGGCAAACTTCAAAATGTGAATTTGATTGGAGGATACTACGATGCGGGTGATAACGTCAAATTTGGATGGCCGATGGCATTTACAACCACCTTATTGAGTTGGGCTGCTGTAGAGTACGAGAGTGAGATATCTTCAATAAACCAGCTTGGGTACCTCCACAGTGCTATCCGCTGGGGCGCAGACTTCATATTGCGAGCCCACACTTCCCCAACCACCCTCTATACACAGGTGGGAGATGGAAACGCGGATCACCAATGTTGGGAGCGCCCGGAAGACATGGATACACCAAGAACAGTCTACAAGATAGATGCTAATTCCCCAGGAAGTGAAGCCGCAGCTGAGTCTGCTGCTGCTCTTTCTGCTGCTTCAATTGTCTTCAAGAAAATAGATGCCAATTATTCCTCAACGCTATTAAGCCAGTCAAAATCACTGTTTGATTTTGCAGACAAGTATAGAGGTTCTTACTCGGGTTCTTGCCCATTCTATTGCTCGTACTCAGGTTACCAGgATGAACTGTTATGGGCTGCTTCTTGGCTATACAAGGCCAGTGGAGAAAGCAAGTACTTGAGCTACACCATAGGCAACCAAGGTTGGAGTCATGCGGTGTCTGAGTTCAGCTGGGATAACAAATTTGTTGGAGCTCAGACGTTACTAACGGagGAATTCTATGGTGGGAAGAAAGACTTGGCCAAGATTAAGAGTGATGCTGAATCATTTATATGTGCAGTGATGCCAGGAAGTAGCTCTCTACAGATTAAAACAACTCCtgGTGGGCTTCTGTTTACTAGAGATAGTAGTAATTTGCAATATGCCACGAGCTCAACCATGGTGTTATTCATTTTCTCTAAAATCCTAGACAGAAATCATATTGATGGAATCAATTGTGGCTCGGCGCATTTCACACCCTCTCAAATTAGAGCCTTTGCGAAAACACAGGTGGACTACATACTAGGAAACAATCCCAGGAAGATGTCCTACATGGTGGGATTTGGCAGTAAATACCCAAAACAATTACATCACAGAGGCTCATCCATCCCTTCAATCAATGCTCACCCGGCCAAGGTGGGTTGCAATGATGGTCTCTCAGGCTATTACAATTCTGGTAATCCAAATCCCAATATTCATGTGGGTGCGATTGTTGGAGGCCCCGATTCAAATGACCAATTCAATGATGCAAGATCTGATTATTCTCACAGCGAGCCTACCACCTATATGAATGCTGCTTTCGTGGGTTCAGTGTCTGCTTTGCTTGGCAAAACGGCCGAAACCAATTTGAGGACTCTGCAGTTTCCCTAG 1515 0.4521 MGYYLVVSGLFLWCAMVSHNGLAMTDWKLMSSSANYDYADALGKAILFFEGQRSGKLPTSQRVKWRGDSALSDGKLQNVNLIGGYYDAGDNVKFGWPMAFTTTLLSWAAVEYESEISSINQLGYLHSAIRWGADFILRAHTSPTTLYTQVGDGNADHQCWERPEDMDTPRTVYKIDANSPGSEAAAESAAALSAASIVFKKIDANYSSTLLSQSKSLFDFADKYRGSYSGSCPFYCSYSGYQDELLWAASWLYKASGESKYLSYTIGNQGWSHAVSEFSWDNKFVGAQTLLTEEFYGGKKDLAKIKSDAESFICAVMPGSSSLQIKTTPGGLLFTRDSSNLQYATSSTMVLFIFSKILDRNHIDGINCGSAHFTPSQIRAFAKTQVDYILGNNPRKMSYMVGFGSKYPKQLHHRGSSIPSINAHPAKVGCNDGLSGYYNSGNPNPNIHVGAIVGGPDSNDQFNDARSDYSHSEPTTYMNAAFVGSVSALLGKTAETNLRTLQFP 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2894 504 PANTHER ENDOGLUCANASE 18-RELATED 4 496 - -
Ssu2g2894 504 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 3. 462 480 IPR033126 -
Ssu2g2894 504 Gene3D - 33 504 IPR012341 GO:0005975
Ssu2g2894 504 Pfam Glycosyl hydrolase family 9 38 484 IPR001701 GO:0004553|GO:0005975
Ssu2g2894 504 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 2. 388 414 IPR018221 -
Ssu2g2894 504 PANTHER ENDO-1,4-BETA-GLUCANASE 4 496 - -
Ssu2g2894 504 SUPERFAMILY Six-hairpin glycosidases 35 494 IPR008928 GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2894 Ssu-Chr2 90191559 90195833 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g2894 37 490 Glycoside Hydrolase AT4G23560 73.789 0.0 687
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2894 - - gmx:547834 911.753
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2894 2 90191559 90195833 Ssu2g2894 2 90191559 90195833 ECH