Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2890 ATGGCGGCTGCTTCCTTTACAACATCTTCCATCCTCTTCCCATTCACAACAACCTCTAAATCCCCTCATCTATTTGCCTCTTTGCCTCGCAAACATCACACCCTCCTTCCCAGGCTCCGTCTCAGACCGGTGTCAGCCTCAGCGGCTTCAACTCCAACAACCCCCTCCGTCCAAATCGACAAATCCGCAGTCTCCGCCACTCCCTCCAAGGCTCTTCCCTTTCGGGTCGGGCACGGTTTTGACCTCCACCGATTGGAACCCGGTTACCCCCTAATCATCGGAGGAATCAACATACCCCACGATAGAGGTTGCGAGGCCCATTCCGATGGGGACGTTCTGCTTCACTGCGTCGTCGATGCTATTTTAGGGGCGTTGGGTCTTCCTGATATTGGCCAAATATTTCCGGATTCGGATCCTAAGTGGAAGGGTTGTGCCTCTTCCGTGTTCGTCCAAGAATCTGTGAGACTTATGCATGAGGCTGGTTATGAGATTGGAAATTTAGATGCTACACTGATACTTCAGAGGCCAAAACTTAGCCCGCACAAGGATGCTATCAAGGCCAACTTATCTGCACTGCTTGGAGTGGACTCTTCTGTAGTAAATATCAAAGCAAAAACTCATGAAAAGGTTGACAGCCTTGGAGAAAATAGAAGTATAGCGGCTCACACAGTGGTTCTTCTGATGAAGAAATGA 693 0.4978 MAAASFTTSSILFPFTTTSKSPHLFASLPRKHHTLLPRLRLRPVSASAASTPTTPSVQIDKSAVSATPSKALPFRVGHGFDLHRLEPGYPLIIGGINIPHDRGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGCASSVFVQESVRLMHEAGYEIGNLDATLILQRPKLSPHKDAIKANLSALLGVDSSVVNIKAKTHEKVDSLGENRSIAAHTVVLLMKK 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2890 230 Gene3D - 71 230 IPR036571 GO:0008685|GO:0016114
Ssu2g2890 230 PANTHER 2-C-METHYL-D-ERYTHRITOL 2,4-CYCLODIPHOSPHATE SYNTHASE 8 230 - -
Ssu2g2890 230 SUPERFAMILY IpsF-like 73 229 IPR036571 GO:0008685|GO:0016114
Ssu2g2890 230 PANTHER 2-C-METHYL-D-ERYTHRITOL 2,4-CYCLODIPHOSPHATE SYNTHASE, CHLOROPLASTIC 8 230 IPR003526 GO:0008685|GO:0016114
Ssu2g2890 230 Hamap 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [ispF]. 74 229 IPR003526 GO:0008685|GO:0016114
Ssu2g2890 230 ProSitePatterns 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase signature. 108 123 IPR020555 GO:0008685
Ssu2g2890 230 Pfam YgbB family 74 227 IPR003526 GO:0008685|GO:0016114
Ssu2g2890 230 CDD MECDP_synthase 75 227 IPR003526 GO:0008685|GO:0016114
Ssu2g2890 230 TIGRFAM ispF: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 75 229 IPR003526 GO:0008685|GO:0016114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2890 K01770 - gmx:100306378 399.053
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2890 2 90161610 90163954 Ssu2g2890 2 90161610 90163954 ECH