Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2841 ATGGCTTGCTTCCCCAACCTCACGGCACTGTGCTCCCTCCTCATGCTGGCCGCCTCGTTGGCCACGACGCACGCCGCAAACTTCGAGATCGTCAACAACTGCCCCTACACGGTGTGGGCGGCGGCGAGCCCCGGCGGTGGCCGCCGCCTCGACCGCGGCCAAACGTGGAACCTGTGGGTGAACCCCGGCACCGCCATGGCACGCATCTGGGGCCGCACCGGCTGCAACTTCGACGGCAGCGGCCGTGGCCGTTGCCAGACCGGAGACTGCACCGGCGGACTCCAATGCACGGGCTGGGGCGTCCCTCCCAACACGCTTGCCGAGTTCGCACTGAACCAATTCGCCAACCAGGATTTCTACGACATCTCTCTCGTCGATGGGTTCAACATTCCCATGGACTTCTACCCCCTCAACGGTGGGTGTCACAAGATCAGTTGTACCGCTGACATTAATGGGCAGTGCCCCGGCCCATTAAGGGCCCCTGGTGGATGCAACAACCCCTGCACTGTGTTTAAGACCAATGAGTATTGTTGCACTAATGGGCCTGGAAGCTGTGGGCCCACTAACTACTCAAGGTTCTTTAAGGATAGGTGCCACGATGCTTATAGTTTCCCTCAGGATGACCCAACGAGCACGTTCACGTGCCCCGCTGGGTCTAACTATAAGGTTGTGTTCTGTCCACTGGGATCTCCTCATATTCCTCTTCAGATGCCTGGTAGTACCAGCAACGAGTAttga 738 0.5908 MACFPNLTALCSLLMLAASLATTHAANFEIVNNCPYTVWAAASPGGGRRLDRGQTWNLWVNPGTAMARIWGRTGCNFDGSGRGRCQTGDCTGGLQCTGWGVPPNTLAEFALNQFANQDFYDISLVDGFNIPMDFYPLNGGCHKISCTADINGQCPGPLRAPGGCNNPCTVFKTNEYCCTNGPGSCGPTNYSRFFKDRCHDAYSFPQDDPTSTFTCPAGSNYKVVFCPLGSPHIPLQMPGSTSNEY 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2841 245 Gene3D Thaumatin 25 228 IPR037176 -
Ssu2g2841 245 SUPERFAMILY Osmotin, thaumatin-like protein 27 227 IPR037176 -
Ssu2g2841 245 Pfam Thaumatin family 32 227 IPR001938 -
Ssu2g2841 245 PANTHER OS03G0233200 PROTEIN 13 227 IPR001938 -
Ssu2g2841 245 PANTHER PATHOGENESIS-RELATED PROTEIN R MINOR FORM 13 227 - -
Ssu2g2841 245 ProSitePatterns Thaumatin family signature. 81 96 IPR017949 -
Ssu2g2841 245 PIRSF PR5 2 243 IPR001938 -
Ssu2g2841 245 PRINTS Pathogenesis-related protein signature 118 134 IPR001938 -
Ssu2g2841 245 PRINTS Pathogenesis-related protein signature 81 110 IPR001938 -
Ssu2g2841 245 PRINTS Pathogenesis-related protein signature 46 55 IPR001938 -
Ssu2g2841 245 PRINTS Pathogenesis-related protein signature 217 226 IPR001938 -
Ssu2g2841 245 PRINTS Pathogenesis-related protein signature 68 79 IPR001938 -
Ssu2g2841 245 PRINTS Pathogenesis-related protein signature 27 39 IPR001938 -
Ssu2g2841 245 ProSiteProfiles Thaumatin family profile. 25 227 IPR001938 -
Ssu2g2841 245 SMART tha2 28 227 IPR001938 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2841 Ssu-Chr2 89459507 89460244 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g2841 12 227 Receptor kinase-like Gene Family AT5G38280 36.066 6.04e-40 144
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2841 - - gmx:100240704 483.411
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2841 2 89459507 89460244 Ssu2g2841 2 89459507 89460244 ECH