Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2816 ATGGATGATGACCTTTTCCACAAGCACAAAGTGCCACCTGGTGTCATAAAAGCGATTAAGTTTGATGTCTTAACTGAAGAAGATATAGAGAATATCTCTGTTTTGGAGATAAATGCAGTCGGGCAGGTCACTGGTTCAAATTTGGGACTTCCTAATGTATTTGACGAGTGTGCAACATGTGGttctaaagagaaaaaaatgtgtgaaggTCATTTTGGAGTTATCAAATTTCCTTTTGCCATCCTCCATCCATATTTTATGTCAGAGATTACACAAATCTTGAATAGGATTTGCCCTGTTTGTAAATCTATCCGTCACGAATCTAAGGGTGCTCAATTAATCTTTGGAATCAAGCGGCCTAATGGTTGCAAATATTGTTCTGGCAATGGTATGGGTCGTTATCCAACAATGAAATTCAGAGTTTCCTCCAATGATCTCTTTAGAAGAACTGCAATTATTGTTGAAGTAAATGATAAGGCCTCAAAGAAGAAAACTTTGGGGCGAGGACTTCCTAGTGATTATTGGGATTTTATTCCTTGTGATGCtcaacaagaagaaaatactgCAAAGAGAAGAGTTTTATCACCTGTGCAGGTTATTTCTTTGTTGAATGATGTTGATCCAAgctttattgaaaaatatgttcCAAGAAAGAATTTGCTCTGTCTTAATTGCTTCCTGGTGACTCCAAATTGTCATCGTGTGACAGAAGTCCCTTATGCAATTCCTAATGGAAACCGATTGAGTTTTgatgaCAGGACTCGATCTTGTAAGAAATTGGTTGATTTCAGGGGTACAGCCAATGAGTTAAGTTCTCGTGTTTTGGATTGCCTGAGGATCTCTAAGCTAAATCCTGATAAAACACCAAATAGTATTTTTGCTGATCTCCAGCAAAGAAAGGTGGCAGAAAATGCTTGCCATTCTTCTGGTTTAAGGTGGATAAAAGATGTGGTTCTTGGAAAACGCAATGATAGTACATTCCGTACTGTGGTTGTTGGTGATCCAGACCTTAAGCTTAGTGAAATTGGTATACCTTGTCAAATTGCTGAAAGTTTGCAGGTTTCTGAGTATGTGAACAGGCAGAATAGGGAAAAGCTGCTTTATTGTTGTGAGCTACGCTTGTTAGAGAAGGGACAGATAAATGTCTGCAGAAAGGGCAGTTCAGTTCTTCTGTATAAAAAGGAAGATCTACAGGTAGGGGACATATTTTATAGGCCTCTTGGTGATGGGGATAAAGTGCTGATAAATAGGCCCCCTTCCATACATCAACATTCAATGATTGCTCTCACAGTTAGGGTCCTTCCAATATCTTCTGTAGTGTGTATTAACCCACTCTGTTGTTCCCCACTACGTGGGGATTTTGATGGTGATTGCCTTCACGGGTATATTCCACAATCAGTTAGTGCAAGAGTTGAGCTTAATGAGCTGGTTGCTTTAGATAGGCAATTGATTAATGGGCAAAGTGGTAGAAATTTGCTTTCACTATCTCAGGATAGTTTAACTGCTGTATATTTGCTAATGGAAGATGGGGTCCTTTTGAATGTTTACCAAATGCAGCAGCTTCAAATGCTTTGTAACAAAAGATTAACACCTCCAGCAATTGTAAAAGCTCCTTCGAGTAATAGCTCATTTTGGAGTGGCAAGCAATTGTTCAGCATGCTCTTGCCTTCTGATTTTGACTATTCTTTTCCTTCAGACGGAGTATTTGTTAGTGATGGGGAGCTTGTATCTTCTTCCGAGGCTTCTGGTTGGTTGCGTGATTCTGACTGTAATGTTTTCCAGAGTCTTGTGGAACATTTTCAAGGGAAGACTCTAGACCTATTGTATGCTGCGCAGAAAGTTCTCTGTGAGTGGCTGTCTATGACAGGTTTTAGTGTTTCACTCTCAGATCTGTACCTTTCTTCTGATTCCTATGCACGAAAAAACATGATGGAGGAAATCTTTTATGGCTTACAAGATGCAGAACAGGCATGTAATTTCAAGCAGCTATTGTTGGATTATTATTGTGATTTTCTGTCAGGAAGTCTTCAAGAGAGTGAAAATGCTATGACTGTTGATGCAGATCGTCTGAATTATGAAAGACAAATATCTGCTGCTCTCAGTCAAGCGTCAGTTGATGCTTTTAGGCAAGTTTTTCGCAATATTCAAAGTTTAGCTGACAAATATGCATGTAAGGACAATACTTTCCTTGCTATGATTAAGGCTGGAAGCAAGGGTAATTTGCTGAAATTAGTGCAGCATTCCATGTGCCTTGGCATGCAAAATTCTCTGGTCCGCTTGTCATACAGACTACCCCGTCATCTTTCATGTGCTGCTTGGAATAGTCAAAAGGGGCTTGATTCAATCCAGATGTTTTCCGGTACCCTTGAATCTGTTCAGTCTTACATTCCATATGCTGTGGTTGAAGGCTCATTTTTAACTGGGTTGAATCCACTTGAATGTTTTGTTCATTCTGTGACAAATCGTGATAGCTCTTTCAGTGACAATGCAGACCTTCCTGGAACATTGACACGTAGACTTATGTTCTTCATGCGTGATTTGTATGATGCATATGATGGAACAGTGAGAAATTTATATGGTAATCAACTTATTCAGTTTTCTTATGATATTGAGGAAGACTCTTCATGTGATAAAAGTTTCCAAGAGTATACTATAGGTGGTGAACCAGCTGGGGCACTTTCTGCTTGTGCAATTTCTGAAGCTGCATACAGTGCTTTGGGTCAGCCAGTTAGTCTACTTGAAACATCACCTTTGctgaatttgaaaaatgttcTGGAGTGTggttcaaggaaaaaaaatggtgacCAGACTGTGTCTTTATTTTTGTCTGAAAAGCTTGGTAAACAGAGACATGGGTTTGAATATGCAGCTCTAGAAGTTAAGAATTATTTGGAGAGATTGTTGTTCTCAAACATTGTTTCTACGGTGATGATAATATTCACCCCACATGACTGTAGCAGCCTAGAAAAATATAGTCCTTGGGTTTGCCACTTTCATTTAGACAAGGAAATTGTAACGAGAAGAAAATTGAAAGTGCATTCTATCATTGACTCTCTTTACCAGAGATATTACTCCCagagaaaagaatcaaaagtcTGTTTTACCAATTTGAAAATATCAAGCAACAGGCAGTGTTCTGCTGATTCCATGGAAGGTGAAGACACTTCTATAGATAAAGAAGAGGGTGATGATTGCATCACGGTCACAATTGTTGAACACTCTAAGAATTCTATACAACTGGATTCTGTTCGGGACTTGGTGATACCTTTTCTTCTAGGAACAGCAATTAAAGGATTTCTGGACATCAAGAAGGTTGATATTCTCTGGAATAATCAGTCAAAAGTAACAAATTCTTATAATGGTTCTTCCGGTGAACTGTACTTGAGGGTTGCTATGTCCAGCGAGGGTAACAGTGGAAGATTCTGGGGTGTACTCAAAAATCATTGTCACAAGATAATGGAGATAATTGACTGGATGCGAAGTCATCCTGATAACATAAATCATTTCTCATCAGCCTATGGAATTGATGCAGGGTGGCAATATTTTCTCAATAGTTTGGCGTCTGCAACGTCTGATACTGGCAAGTCAATCCTTCCTAAGCATCTGTGTCTTGTTGCCAATATTCTGTCAGCTAGTGGAGAGTTTGTGGGATTAAATGCTAAAGGCATGGCACGGCAAAGAAAACATGCGTCCGTTTCATCACCATTTGTGCAAGCATGCTTTTCTAATCCAGGTAGTTCCTTTGTAAAAGCTGCCAAGTCTGGAGTCACAGATAATCTTCAGGGCAGCCTGGATGCGTTGGCTTGGGGAAACTGTCTGTCTATGGGGACAAGTGGACTGTTTGATATCATATATTCAGAGAAGGGACATGAGGTATCTAAGTCTGTAGATGTGTATGAGCTGCTAGAAGCCAGTTTTGACAAGCCGAACAGTAAGATTGGTACCCAATCTTACAAATATTCATCTGACAAATGCAGTTCTGAGTTTAAGCATAAAAATGGTTATGCCTTGAAGGATAGAAAGCAGTGGAAAagcattttaagaaattttgtgACAGTAAATGATATTCAGAATCTGACTTCTGCATCAAGGTGCATATTGAACAAGTATTCGATTGATGAGCTGCTAAGTGAGAGTGACAGGTCAACAATGCTAAGGGTTTTGCATTTTCATCCTCGTAGAAGTGAGAAGTTTGGCATTGGACCACAGGACATTAAGGTTGGATGGCATCCTAAATATAAGGATAGTCGCTGCTTCCATATAGTACGAACTGATGGGAGTGTTGAAGATTTTTCATACCGCAAATGCATTCTTGGTGCACTCGAGATCATTGATCCAAAAAAGTCAAAGATCCAGAAGAGAAAATGGTTGGGACATGGTTACACGTAA 4389 0.3835 MDDDLFHKHKVPPGVIKAIKFDVLTEEDIENISVLEINAVGQVTGSNLGLPNVFDECATCGSKEKKMCEGHFGVIKFPFAILHPYFMSEITQILNRICPVCKSIRHESKGAQLIFGIKRPNGCKYCSGNGMGRYPTMKFRVSSNDLFRRTAIIVEVNDKASKKKTLGRGLPSDYWDFIPCDAQQEENTAKRRVLSPVQVISLLNDVDPSFIEKYVPRKNLLCLNCFLVTPNCHRVTEVPYAIPNGNRLSFDDRTRSCKKLVDFRGTANELSSRVLDCLRISKLNPDKTPNSIFADLQQRKVAENACHSSGLRWIKDVVLGKRNDSTFRTVVVGDPDLKLSEIGIPCQIAESLQVSEYVNRQNREKLLYCCELRLLEKGQINVCRKGSSVLLYKKEDLQVGDIFYRPLGDGDKVLINRPPSIHQHSMIALTVRVLPISSVVCINPLCCSPLRGDFDGDCLHGYIPQSVSARVELNELVALDRQLINGQSGRNLLSLSQDSLTAVYLLMEDGVLLNVYQMQQLQMLCNKRLTPPAIVKAPSSNSSFWSGKQLFSMLLPSDFDYSFPSDGVFVSDGELVSSSEASGWLRDSDCNVFQSLVEHFQGKTLDLLYAAQKVLCEWLSMTGFSVSLSDLYLSSDSYARKNMMEEIFYGLQDAEQACNFKQLLLDYYCDFLSGSLQESENAMTVDADRLNYERQISAALSQASVDAFRQVFRNIQSLADKYACKDNTFLAMIKAGSKGNLLKLVQHSMCLGMQNSLVRLSYRLPRHLSCAAWNSQKGLDSIQMFSGTLESVQSYIPYAVVEGSFLTGLNPLECFVHSVTNRDSSFSDNADLPGTLTRRLMFFMRDLYDAYDGTVRNLYGNQLIQFSYDIEEDSSCDKSFQEYTIGGEPAGALSACAISEAAYSALGQPVSLLETSPLLNLKNVLECGSRKKNGDQTVSLFLSEKLGKQRHGFEYAALEVKNYLERLLFSNIVSTVMIIFTPHDCSSLEKYSPWVCHFHLDKEIVTRRKLKVHSIIDSLYQRYYSQRKESKVCFTNLKISSNRQCSADSMEGEDTSIDKEEGDDCITVTIVEHSKNSIQLDSVRDLVIPFLLGTAIKGFLDIKKVDILWNNQSKVTNSYNGSSGELYLRVAMSSEGNSGRFWGVLKNHCHKIMEIIDWMRSHPDNINHFSSAYGIDAGWQYFLNSLASATSDTGKSILPKHLCLVANILSASGEFVGLNAKGMARQRKHASVSSPFVQACFSNPGSSFVKAAKSGVTDNLQGSLDALAWGNCLSMGTSGLFDIIYSEKGHEVSKSVDVYELLEASFDKPNSKIGTQSYKYSSDKCSSEFKHKNGYALKDRKQWKSILRNFVTVNDIQNLTSASRCILNKYSIDELLSESDRSTMLRVLHFHPRRSEKFGIGPQDIKVGWHPKYKDSRCFHIVRTDGSVEDFSYRKCILGALEIIDPKKSKIQKRKWLGHGYT 1462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2816 1462 Gene3D - 1348 1439 - -
Ssu2g2816 1462 Pfam RNA polymerase Rpb1, domain 3 483 631 IPR007066 GO:0003677|GO:0003899|GO:0006351
Ssu2g2816 1462 Gene3D - 315 486 - -
Ssu2g2816 1462 Pfam RNA polymerase Rpb1, domain 1 16 234 IPR007080 GO:0003677|GO:0003899|GO:0006351
Ssu2g2816 1462 Gene3D - 629 809 IPR038120 -
Ssu2g2816 1462 PANTHER DNA-DIRECTED RNA POLYMERASE IV SUBUNIT 1 2 1358 - -
Ssu2g2816 1462 Pfam RNA polymerase Rpb1, domain 4 699 759 IPR007083 GO:0003677|GO:0003899|GO:0006351
Ssu2g2816 1462 Gene3D RNA polymerase Rpb1, domain 3 487 628 IPR042102 -
Ssu2g2816 1462 Gene3D RNA polymerase ii 353 405 - -
Ssu2g2816 1462 SUPERFAMILY beta and beta-prime subunits of DNA dependent RNA-polymerase 9 1286 - -
Ssu2g2816 1462 Pfam Protein of unknown function (DUF3223) 1366 1437 - -
Ssu2g2816 1462 PANTHER DNA-DIRECTED RNA POLYMERASE 2 1358 IPR045867 GO:0003899|GO:0006351
Ssu2g2816 1462 CDD RNAP_IV_RPD1_N 24 856 IPR040403 -
Ssu2g2816 1462 SMART rpolaneu7 219 507 IPR006592 GO:0003677|GO:0003899|GO:0006351
Ssu2g2816 1462 Gene3D RNA polymerase II, clamp domain 7 115 IPR044893 -
Ssu2g2816 1462 Pfam RNA polymerase Rpb1, domain 2 320 477 IPR000722 GO:0003677|GO:0003899|GO:0006351
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2816 Ssu-Chr2 89124253 89142780 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2816 K16250 - gmx:100796185 2598.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2816 2 89124253 89142780 Ssu2g2816 2 89124253 89142780 ECH