Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2797 ATGTTGGGGACAGCACATAGCATCTCTAGAATTTTTCCTTACCAACCTCTCGACGGATTGATGGAGCTCAAAGAGGCTGTGGCTGGTTTCATGTCTCAAGTCTTGGAAAAGCTGGTTTTCTTCAACCCCTCACGAATGGTACTTACTGCAGGTGCCACCTCTGCCATTGAGATTCTAAGCTTTTGCCTAGCAGATCATGGAAATGCATTCCTTGTTCCCACGCCTTTTAGCCCTGGTTTTGACGGGGTTGTAAAATGGCGCACTGGCGTGGAGATAGTACCTGTTCCCTGCCGCAGCGCTGATGACTTCAATTTAAGTATAACTTCACTTGAGCGAACCTTCAATCAAGCAAAGATGCGTGGTCAAAAAGTTCGTGGAGTTATAGTAACCAACCCCTCAAATCCTGCTGGCAAGTTGTTGAATCGGGAAACACTGTTGGATCTTTTGGACTTTGCTAGAGAGAAGAACATTCACATAATCTCTAATGAAATGTTTGCGGGCTCTTATTATGGAAACGAAGAGTTTGTAAGCATGGCAGAAGTCATGGAGGCAGAAGATCATGATCGGGATAGAGTTCATATAGTGTTTGGTTTATCGAATGAGCTCTCTGTTCCAGGTTTGAAGGTGGGTGTTATCTACTCCTATAATGACAATGTCGTGGCTGCATCTAGCAAATTGGCAAGGTTCTCCACTGTTTCTGCTCCAACCCAAAGATTGCTTATCCCCCTGCTTTCAGATACAAGTTTTGTGCAAAAGTTTATTGAGATTAACAGATTGAGGCTACGGAAAATGTATGATACATTTGTGGCAGGGTTGAAGCAATTGGGGATTGAGTGCACTAGGAGCAGTGGTGGTTTTTGCTGCTGGGCTGACATGAGCAGGTTGATCCGCTCTTACAGTGAAAAGGGGGAGCTTGAGCTCTGGGATAGATTGTTGAATGTAGCTAAAATCAATGTTACCCCGGGATCCTCATGTCACTGTATTGAGCCTGGatggttttgtttttgttttgctaCATCCACTGAAAAGGATGTTTCTGTGGTAATGGAACGGATTCGGAGAATTTCTGATGCCGCAAAGTGA 1083 0.4386 MLGTAHSISRIFPYQPLDGLMELKEAVAGFMSQVLEKLVFFNPSRMVLTAGATSAIEILSFCLADHGNAFLVPTPFSPGFDGVVKWRTGVEIVPVPCRSADDFNLSITSLERTFNQAKMRGQKVRGVIVTNPSNPAGKLLNRETLLDLLDFAREKNIHIISNEMFAGSYYGNEEFVSMAEVMEAEDHDRDRVHIVFGLSNELSVPGLKVGVIYSYNDNVVAASSKLARFSTVSAPTQRLLIPLLSDTSFVQKFIEINRLRLRKMYDTFVAGLKQLGIECTRSSGGFCCWADMSRLIRSYSEKGELELWDRLLNVAKINVTPGSSCHCIEPGWFCFCFATSTEKDVSVVMERIRRISDAAK 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2797 360 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 67 88 - -
Ssu2g2797 360 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 121 145 - -
Ssu2g2797 360 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 157 180 - -
Ssu2g2797 360 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 223 246 - -
Ssu2g2797 360 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 45 65 - -
Ssu2g2797 360 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 191 215 - -
Ssu2g2797 360 Pfam Aminotransferase class I and II 7 352 IPR004839 GO:0009058|GO:0030170
Ssu2g2797 360 PANTHER BIFUNCTIONAL ASPARTATE AMINOTRANSFERASE AND GLUTAMATE/ASPARTATE-PREPHENATE AMINOTRANSFERASE-RELATED 6 358 - -
Ssu2g2797 360 PANTHER AMINOTRANSFERASE ACS12-RELATED 6 358 - -
Ssu2g2797 360 SUPERFAMILY PLP-dependent transferases 8 355 IPR015424 -
Ssu2g2797 360 Gene3D Aspartate Aminotransferase, domain 1 247 351 IPR015422 GO:0003824
Ssu2g2797 360 CDD AAT_like 14 354 - -
Ssu2g2797 360 Gene3D - 8 246 IPR015421 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2797 Ssu-Chr2 88865244 88867105 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2797 K14270 - gmx:100783490 651.744
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2797 2 88865244 88867105 Ssu2g2797 2 88865244 88867105 ECH