Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2792 atggccACCTCTCAGGGTGGTAACAGTTACAGAAACGGCACTCACACTCACCGAAGCTCTCTCAAACCACACGTCAAGTCCAAACCTACGCAACGCCGTAATAGCACCGGCAAGGACCACGCTGCTAGTGCTGTTCCTGGAAGAGTTAGAGTAGCGGTTAGGTTGCGTCCACGAAATGCAGAGGAATCGGTGGCGGATGCTGACTTTGCCGACTGTGTGGAACTTCAGCCAGAGCTCAAGAGGTTGAAACTTCGGAAAAACAATTGGGATGCAGATACTTATGAATTTGATGAGGTGCTCACTGAATTTGCATCTCAGAAACGCGTTTATGAAGTTGTGGCCAGGCCTGTTGTGGAGAGTGTGCTGGATGGCTACAATGGGACAATTATGGCATATGGGCAGACTGGTACTGGTAAGACTTATACTCTTGGACGACTTGGAGAGGAAGACAATGCTGCACGTGGAATAATGGTGCGAGCCATGGAGGATATTCTTGCGGATGTTTCTTTGGAAACTGATTCAGTCTCAGTCTCTTATTTGCAGCTTTATATGGAGACTATACAAGATCTGCTTGACCCTGCCAATGATAACATAACCATCGTAGAAGATCCCAAAACTGGTGATGTTTCATTACCTGGAGCTAGCCTAGTTGACATTAGAGACCAGCAGAGTTTTGTAGAACTATTAAGATTAGGAGAGGCTCACCGCTTTGCTGCGAATACAAAACTGAATACAGAATCTTCTCGAAGTCATGCTATTCTGATGGTGCATGTAAAGAGATCGGTGAAAGGAAGAGATAGTGCTCTTTCAAGTGAAAATGGCAACCATCCACACATAGTTAAATCGACAAAGCCACCTGTTGTTCGGAAAGGCAAGTTGGTTGTTGTAGATCTTGCTGGTTCAGAGCGAATTGACAAGTCAGGAAGTGAAGGACATACGTTAGAGGAAGCCAAATCTATCAATCTGTCCTTGAGTGCATTGGGGAAGTGCATTAATGCACTTGCAGAGAATAGTGCACATGTGCCATTTCGTGACTCAAAGCTTACTAGATTGTTACGTGATTCATTTGGAGGTACAGCAAGAACTTCACTAGTCATTACTATTGGACCATCACCTCGGCATAGGGGAGAGACTGCTAGTACTATAATGTTTGGACAGAGGGCTATGAAGGTGGAAAACATGGTAAAGTTAAAGGAGGAATTTGATTACAAAAGCTTATCTAGGAGGCTAGACATAGAATTAGATAAACTCATTGTGGAACATGAAAGGCAGCAGAAGGCATTTGAGGATGAGATTGAAAGGTTAGCCACTGAAGCACAACATCGGATATCTGAGGCTGAAAGAAACTACATAGATTCATTGGAGgaCGAGAGATCAAAATATCAGAAAGACTACATGGAATCAATTAAGAAGCTTGAAGAGCAGTTAGTGCTGAATCAACGGAAGAGTGAGGAACCTCATATGAAATCGAGTGGAGAGATTCCCAGAGTGTCTGCCGAGGAACTCGCTGATTTGAAACAAATGCTTCAGAAAGAGACTCATCTAAGAAAAGCTGCGGAAGTGGAAGTAAATAATCTGAAGATTCAAGTGGCTGAAGTAAAAAAGTCAGAGGCAACAGGAAAGTCGGAGATGTTAAAACTTCATAAGATGTTGGAAGATAAGGAACGTCAAAAAGAGAAACTTGAAGGAGAAATAGCAATATTACAAAGTCAATTGTTGCAGTTAACTCTTGAAGCTGATGAGACAAGACGGCAACTCGACAGAGGtggttttgaaaaagaaatggatGGTCTTAATTCTCTCACTTCTCAAATTAAGCATCGGCAGCTAGCTTCAGGAAATGGAGAGAAGCCCTCAATAGCCAAGCTCTTTGAGCAAGtGGGATTGCAGAAAATTTTGTCATTGCTTGAAGCAGAAGATGCTGATGTGCGAATCCATGCTGTGAAAGTTGTAGCAAATCTAGCTGCTGAAGAAACAAATCAAGGGAAGATTGTCGAAGCAGGAGGGCTCACATCCTTGCTTAACCTGCTTAAGAGCTCGCAAGATGAGACCATACATAGAGTTGCTGCAGGTGCAATTGCAAATTTGGCAATGAATGAAACCAACCAAGAACTCATTATGGCCCAAGGGGGCATTAGTTTACTGTCAATGACTGCAGCCAATGCTGAAGATCCACAAACCCTTCGAATGGTTGCTGGAGCCATTGCTAATCTTTGTGGCAATGATAAACTACAAACAAAACTAAGGGGTGAAGGTGGTATTAAGGCACTGCTGGGAATGGTCAGATGCAGACATCCTGATGTACATGCACAAGTTGCTCGTGGAATAGCAAATTTTGCGAAGTGTGAATCAAGAGCATCTAGTCAAGGGACAAAGAGTGGAAGATCTTTCCTTATTGAGGATGCTGCCCTTCCATGGATTGTGCAAAATGCAAATAACGAAGCCTCATCAATTAGGCGTCATATTGAGCTTGCACTCTGCCACTTAGCACAACATGAAATAAATGCAAGAGACATGATTAGTGGGGGTGCATTGTCGGAGCTAGTTCGTATCTCCCGAGATTGTTCAAGAGAAGATATAAAGACTCTTGCACATCGAACACTAGTCTCCAGTCCCACTTTCCAAGCTGAAATGAGGCGTTTGCGGGTAAATTACTGA 2658 0.4296 MATSQGGNSYRNGTHTHRSSLKPHVKSKPTQRRNSTGKDHAASAVPGRVRVAVRLRPRNAEESVADADFADCVELQPELKRLKLRKNNWDADTYEFDEVLTEFASQKRVYEVVARPVVESVLDGYNGTIMAYGQTGTGKTYTLGRLGEEDNAARGIMVRAMEDILADVSLETDSVSVSYLQLYMETIQDLLDPANDNITIVEDPKTGDVSLPGASLVDIRDQQSFVELLRLGEAHRFAANTKLNTESSRSHAILMVHVKRSVKGRDSALSSENGNHPHIVKSTKPPVVRKGKLVVVDLAGSERIDKSGSEGHTLEEAKSINLSLSALGKCINALAENSAHVPFRDSKLTRLLRDSFGGTARTSLVITIGPSPRHRGETASTIMFGQRAMKVENMVKLKEEFDYKSLSRRLDIELDKLIVEHERQQKAFEDEIERLATEAQHRISEAERNYIDSLEDERSKYQKDYMESIKKLEEQLVLNQRKSEEPHMKSSGEIPRVSAEELADLKQMLQKETHLRKAAEVEVNNLKIQVAEVKKSEATGKSEMLKLHKMLEDKERQKEKLEGEIAILQSQLLQLTLEADETRRQLDRGGFEKEMDGLNSLTSQIKHRQLASGNGEKPSIAKLFEQVGLQKILSLLEAEDADVRIHAVKVVANLAAEETNQGKIVEAGGLTSLLNLLKSSQDETIHRVAAGAIANLAMNETNQELIMAQGGISLLSMTAANAEDPQTLRMVAGAIANLCGNDKLQTKLRGEGGIKALLGMVRCRHPDVHAQVARGIANFAKCESRASSQGTKSGRSFLIEDAALPWIVQNANNEASSIRRHIELALCHLAQHEINARDMISGGALSELVRISRDCSREDIKTLAHRTLVSSPTFQAEMRRLRVNY 885
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2792 885 Coils Coil 451 471 - -
Ssu2g2792 885 Coils Coil 502 536 - -
Ssu2g2792 885 SMART kinesin_4 46 399 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Ssu2g2792 885 SMART arm_5 699 740 IPR000225 GO:0005515
Ssu2g2792 885 SMART arm_5 741 781 IPR000225 GO:0005515
Ssu2g2792 885 SMART arm_5 657 698 IPR000225 GO:0005515
Ssu2g2792 885 SMART arm_5 617 656 IPR000225 GO:0005515
Ssu2g2792 885 MobiDBLite consensus disorder prediction 17 31 - -
Ssu2g2792 885 MobiDBLite consensus disorder prediction 1 48 - -
Ssu2g2792 885 MobiDBLite consensus disorder prediction 1 16 - -
Ssu2g2792 885 Gene3D Kinesin motor domain 40 421 IPR036961 -
Ssu2g2792 885 PANTHER KINESIN-RELATED 34 877 IPR027640 GO:0003777|GO:0007018
Ssu2g2792 885 SUPERFAMILY ARM repeat 615 868 IPR016024 -
Ssu2g2792 885 Pfam Armadillo/beta-catenin-like repeat 664 697 IPR000225 GO:0005515
Ssu2g2792 885 Gene3D - 598 717 IPR011989 -
Ssu2g2792 885 Gene3D - 718 878 IPR011989 -
Ssu2g2792 885 PRINTS Kinesin heavy chain signature 341 362 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Ssu2g2792 885 PRINTS Kinesin heavy chain signature 292 310 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Ssu2g2792 885 PRINTS Kinesin heavy chain signature 124 145 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Ssu2g2792 885 Coils Coil 544 585 - -
Ssu2g2792 885 Pfam Kinesin motor domain 54 391 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Ssu2g2792 885 CDD KISc 48 389 - -
Ssu2g2792 885 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 48 426 IPR027417 -
Ssu2g2792 885 Coils Coil 418 449 - -
Ssu2g2792 885 PANTHER KINESIN-LIKE PROTEIN KIN-UA 34 877 IPR033291 GO:0008017|GO:0032886|GO:0048364
Ssu2g2792 885 ProSiteProfiles Kinesin motor domain profile. 48 391 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Ssu2g2792 885 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 668 711 IPR000225 GO:0005515
Ssu2g2792 885 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 627 669 IPR000225 GO:0005515
Ssu2g2792 885 ProSitePatterns Kinesin motor domain signature. 291 302 IPR019821 GO:0003777|GO:0005524|GO:0007018
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2792 Ssu-Chr2 88790700 88799521 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g2792 49 420 Miscellaneous Gene Families AT2G21380 34.026 2.25e-45 175
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2792 - - gmx:100804612 1602.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2792 2 88790700 88799521 Ssu2g2792 2 88790700 88799521 ECH