Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2790 ATGTCAGCAACATGTAAGTTTGGAGACAACCTAAGCTTAAACCATAAAACCAACCAACCCACTTCACCTCCGCCGCCACTACAAACCCAAAAATGCCCTGCCAATCTGGTGAAGATGCTACTCTCAGAGCTAAGAGTTCAACGAGGAATAGCCCTTCCAATGGTGGCCATGAACTTGGCTTGGTTTGCCAAGACAGCCATCACAACAGCATTTTTAGGCCGTCTTGGCGAGCTCAGTTTAGCAGGTGGAGCTCTCGGGTTCACTTTTGCTAATGTCACTGGCTTCTCTGTCCTCAATGGTCTATGCGGTGCCATGGAACCCATATGTGGACAGGCTCATGGTGCTAAAAACTTCAGGCTCCTTCACAAGACCCTTCTCATGACAATCTTATTGTTGCTATTGGTATCACTTCCCATCACTTTCTTGTGGCTTAatgttgacaaaattttgattcatttagGCCAACAGCAAGATATCTCCACTGTGGCCAGGACCTATGTTTCCTGTCTCATACCCGACTTGTTTGTCACCTCACTCTTCTGTCCCTTAAAAGCCTACTTGAGCTCTCGAAGCATAACTCTTCCCACCATGTTTAGTTCAGCTGTTGCACTAGCTTTCCACATACCCGTAAACGTAGTGCTCTCAAACACCATGGGCCTCAGAGGAGTCTCCATGGCGGTTTGGATAACTGATCTTATCATTGTGGTTCTGCTAGCCATTTATGTTCTAATTCTTGAGAACACAAAGGAAAGCATGTGGAGGGAAGGAGGGTGGTGGGATCAGAGCATTGTAGATTGGATTAGGCTGCTCAAGCTTTGTGGATCATGCTGCCTCAACACATGTCTTGAGTGGTGGTGCTATGAGATCTTGGTTTTGCTTACTGGCCACTTGACAAACGCCAAGCAAGCAGTGGGAGTTTTGGCCATTGTGCTAAACTTCGACTATTTGCTTTTCTCAGTGATGCTATCACTAGCCACTTGTGTTTCCACTCGTGTCTCAAATGAGCTTGGTGCGAACCAAGCTGGCCTTGCTTACCGATCAGCGTGTGTGTCTCTGGCATTGGGCTTTATCTCGGGTTGCGTAGGTAGCTTGGTGATGGTGGCTGCCAGGGGAATCTGGGGACCCCTGTTTAGCCATGATAGGGGAATTATAAAGGGAGTAAAGAAGACAATGTTGCTGATGGCCCTGGTAGAGGTGTTTAATTTCCCGTTGGCAGTTTGTGGAGGCATAGTTCGAGGGACAGCACGACCCTGGTTAGGCATGTACGCGAATCTAGGTGGATTTTATTTTCTGGCTCTGCCCCTCGGTCTTATTTTTGCCTTCAAGCTCCGTCTTGGGCTTGTTGGACTCTTCATTGGACTTCTTACCGGTATTGTCACCTGCTTGACGCTGTTGTTGGTATTTATTGCACGCTTAAACTGGGTGGAAGAAGCTGCCAAGGCACAAACACTAACAGGACACGAGCAGGTTAAGGAACTTCCCAAATATAACGCAGAAGAACGAGTTGAAGCCCATGAATTAGATGAAGTGTAA 1533 0.4677 MSATCKFGDNLSLNHKTNQPTSPPPPLQTQKCPANLVKMLLSELRVQRGIALPMVAMNLAWFAKTAITTAFLGRLGELSLAGGALGFTFANVTGFSVLNGLCGAMEPICGQAHGAKNFRLLHKTLLMTILLLLLVSLPITFLWLNVDKILIHLGQQQDISTVARTYVSCLIPDLFVTSLFCPLKAYLSSRSITLPTMFSSAVALAFHIPVNVVLSNTMGLRGVSMAVWITDLIIVVLLAIYVLILENTKESMWREGGWWDQSIVDWIRLLKLCGSCCLNTCLEWWCYEILVLLTGHLTNAKQAVGVLAIVLNFDYLLFSVMLSLATCVSTRVSNELGANQAGLAYRSACVSLALGFISGCVGSLVMVAARGIWGPLFSHDRGIIKGVKKTMLLMALVEVFNFPLAVCGGIVRGTARPWLGMYANLGGFYFLALPLGLIFAFKLRLGLVGLFIGLLTGIVTCLTLLLVFIARLNWVEEAAKAQTLTGHEQVKELPKYNAEERVEAHELDEV 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2790 510 CDD MATE_eukaryotic 43 480 IPR045069 GO:0042910|GO:1990961
Ssu2g2790 510 PANTHER MULTIDRUG RESISTANCE PROTEIN 32 490 - -
Ssu2g2790 510 TIGRFAM matE: MATE efflux family protein 53 450 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Ssu2g2790 510 MobiDBLite consensus disorder prediction 1 28 - -
Ssu2g2790 510 MobiDBLite consensus disorder prediction 1 18 - -
Ssu2g2790 510 Pfam MatE 53 213 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Ssu2g2790 510 Pfam MatE 276 437 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Ssu2g2790 510 PANTHER PROTEIN DETOXIFICATION 56 32 490 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2790 Ssu-Chr2 88741344 88742876 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2790 K03327 - gmx:100804083 882.093
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2790 2 88741344 88742876 Ssu2g2790 2 88741344 88742876 ECH