Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2788 ATGAACCTTTCAATTAAGAAGGCCTATATTTCTGCTGATGGCAAGTGGATCATGGATGTTTTCCATGTCACCGATCAAAATGGAAACAAGTTAATGGACGAGAgcgttttaaaatatattgaacaGTCACTTGGGAACATTCACTATGGGAGAACCAACCGCTCTAACGGTCTCACTGCGCTGGAATTAACGGGAACTGACCGAGTTGGTCTTTTATCGGAGGTGTTTGCTGTATTGGCTGATCTTCAATGCGATGTGGTTGAGGCGAAAGTATGGACTCACAATGGCCGCATTGCCTCCTTAATCTATGTAAGAGACTGCAAGTCTGGGTCTACTATTGAGGACTCTcagaaaattaataacattgaaTTGCGCTTAAGAAATGTTTTAAAGGGAGACAATGACATTAGAAGTGCAAAAATTTCTGTCTCTATGGCTGTGATGCATACTGAAAGAAGGCTACATCAAATGATGTTCGCTGACCGTGATTATGAGAGGACCCCCACTCTCAAGTTTACTTCTGATAACCCAGTGGTAACGGTTCAAAATTGGGTAGGAAGGGGTTATTCAGTTGTGAATGTTCAGTGCAAAGATCGAATCAAGCTATTGTTTGATGTTGTTTGCAATTTGACCGACATGGAATATGTTGTATTTCATGCAACTATTAACACTAACGGTGACCAAGCGTACTTGGAGTTTTATATAAGACACAAGGATGGCACTCCAATTAGTTCAGAACCAGAGCGTCAACGTGTAACTCAATGCTTAAAAGCTGCCGTAGAGAGAAGGGCATCTGAGGGTGTTCGACTAGAGTTATGCATAGAAGACAGGCAGGGACTTCTAGCAGAAGTGATGAGAACTTTCCGAGAGAATGGACTGAATGTAACAAGGGCCGAGATATCTACCATAGAAAACATGGCTACAAATGTGTTTTATGTAACAGATGTGATTGGAAACCTAGCTGATCCAAAAATCATTGAATCTGTTAGACAAAAAATTGGGTTACGCAATTTAGAAGTGAAGGAGTTGCCGTTGATAAATCATCAAGAGGTAGAGAGAGAGGATCAAGCGGTTGGAATTGGCGGGGCAGTGTTGTTGTCCATTGGGAGCCTTGTGAGAAGAAATCTATACAATTTGGGACTAATCAAATCCTGTTCTTGA 1161 0.4048 MNLSIKKAYISADGKWIMDVFHVTDQNGNKLMDESVLKYIEQSLGNIHYGRTNRSNGLTALELTGTDRVGLLSEVFAVLADLQCDVVEAKVWTHNGRIASLIYVRDCKSGSTIEDSQKINNIELRLRNVLKGDNDIRSAKISVSMAVMHTERRLHQMMFADRDYERTPTLKFTSDNPVVTVQNWVGRGYSVVNVQCKDRIKLLFDVVCNLTDMEYVVFHATINTNGDQAYLEFYIRHKDGTPISSEPERQRVTQCLKAAVERRASEGVRLELCIEDRQGLLAEVMRTFRENGLNVTRAEISTIENMATNVFYVTDVIGNLADPKIIESVRQKIGLRNLEVKELPLINHQEVEREDQAVGIGGAVLLSIGSLVRRNLYNLGLIKSCS 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2788 386 PANTHER [PROTEIN-PII] URIDYLYLTRANSFERASE-RELATED 1 384 - -
Ssu2g2788 386 ProSiteProfiles ACT domain profile. 269 353 IPR002912 -
Ssu2g2788 386 PANTHER ACT DOMAIN-CONTAINING PROTEIN ACR4-RELATED 1 384 IPR040217 -
Ssu2g2788 386 Pfam ACT domain 61 113 IPR002912 -
Ssu2g2788 386 SUPERFAMILY ACT-like 56 116 IPR045865 -
Ssu2g2788 386 SUPERFAMILY ACT-like 265 333 IPR045865 -
Ssu2g2788 386 CDD ACT_ACR_3 189 263 - -
Ssu2g2788 386 ProSiteProfiles ACT domain profile. 60 144 IPR002912 -
Ssu2g2788 386 CDD ACT_ACR_2 59 132 - -
Ssu2g2788 386 CDD ACT_ACR_4 267 338 - -
Ssu2g2788 386 Gene3D - 58 132 - -
Ssu2g2788 386 Gene3D - 267 339 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2788 Ssu-Chr2 88716102 88717665 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2788 - - gmx:100806283 702.205
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2788 2 88716102 88717665 Ssu2g2788 2 88716102 88717665 ECH