Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2777 atgGGTAAGGATCTGAGCGAGGAGCAAGTTTGTTCGATGAGGGAAGCTTTCAGTCTATTCGACACGGACGGCGACGGTCGGATCGCGCCTTCGGAGCTGGGGATCCTGATGCGGTCTCTGGGCGGGAACCCGACCCAGGCCCAACTGAAAGCCATCGTGGCCGAAGAGAACCTCACGGCCCCTTTCGACTTCCCCCGGTTCCTCGATCTCATGGCCAAACACATGAAGCCCGAACCCTTCGATCGCCAACTGCGCGACGCCTTCAAGGTGCTCGACAAGGACTCCACCGGCTTCGTCTCCGTCTCGGAACTCCGGCACATCCTCACCAACATCGGCGAGAAGCTCGAGCCCTCCGAGTTCGACGAGTGGATCAGGGAAGTCGATGTCGGCTCCGATGGCAAGATCCGTTACGAGGACTTCATCGCCAGAATGGTCGCCAAGTAA 444 0.5923 MGKDLSEEQVCSMREAFSLFDTDGDGRIAPSELGILMRSLGGNPTQAQLKAIVAEENLTAPFDFPRFLDLMAKHMKPEPFDRQLRDAFKVLDKDSTGFVSVSELRHILTNIGEKLEPSEFDEWIREVDVGSDGKIRYEDFIARMVAK 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2777 147 SMART efh_1 83 111 IPR002048 GO:0005509
Ssu2g2777 147 SMART efh_1 119 147 IPR002048 GO:0005509
Ssu2g2777 147 SMART efh_1 12 40 IPR002048 GO:0005509
Ssu2g2777 147 ProSitePatterns EF-hand calcium-binding domain. 21 33 IPR018247 -
Ssu2g2777 147 Gene3D - 3 80 - -
Ssu2g2777 147 CDD EFh 14 55 IPR002048 GO:0005509
Ssu2g2777 147 ProSiteProfiles EF-hand calcium-binding domain profile. 13 43 IPR002048 GO:0005509
Ssu2g2777 147 Gene3D - 81 145 - -
Ssu2g2777 147 Pfam EF-hand domain pair 82 144 IPR002048 GO:0005509
Ssu2g2777 147 ProSiteProfiles EF-hand calcium-binding domain profile. 115 147 IPR002048 GO:0005509
Ssu2g2777 147 Pfam EF-hand domain 13 41 IPR002048 GO:0005509
Ssu2g2777 147 ProSiteProfiles EF-hand calcium-binding domain profile. 79 114 IPR002048 GO:0005509
Ssu2g2777 147 SUPERFAMILY EF-hand 5 144 IPR011992 -
Ssu2g2777 147 PANTHER CALCIUM-BINDING PROTEIN CML13-RELATED 1 147 - -
Ssu2g2777 147 PANTHER CALCIUM BINDING PROTEIN 1 147 - -
Ssu2g2777 147 CDD EFh 83 144 IPR002048 GO:0005509
Ssu2g2777 147 ProSitePatterns EF-hand calcium-binding domain. 92 104 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2777 Ssu-Chr2 88557616 88558059 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g2777 1 147 EF-hand Containing Proteins AT1G12310 84.459 1.59e-91 260
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2777 K13448 - gmx:100500081 287.345
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2777 2 88557616 88558059 Ssu2g2777 2 88557616 88558059 ECH