Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2753 ATGAGAAGTCCGAAGGCGGAGCCCGAAGACAGGGACGTGATTATAGCGAGAGGTGATGGAGAAGATGAGTCATGTTCTGGTTTTCCAGGATTGAGGCTTGGTAGTGGTAGTAAGAGTAGGACCAAAAGTTTTCATCCCCCGATTGAAACGCATTGGGATCTTAATTCAGCAGCAGGGAAAAAGGCTTCGTTCTCTATCAAATCAATGTTGTCTCCATTCACGAAATTTAGAAGGAGTAAAAGCCTTCAAATGATTCTAGAAGGAGCTCGTGATCCTAAGGATACACAAATTGTGGAGTCTTTTCGCGAAATGCTTTTACAAGAAGGCCTCTTGCCACCTAAGCACGATGATTATCACACTCTTCTGAGGTTTCTGCGAATGAGGGATTTCGACATGGCAAAATCCAAAGAGATGTTTCAAAGTTATCTGAAATGGCGCAAGGAATTTCGAGTGGACATGTTTCCAAAGGAATTCAATTTCACGGAGTACAATGAAGTGAAGAAATGCTATCCTCATGGATTCCACGGAGTTGATAAATACGGGAGACCCGTGTATATTGAGAGAGTTGGGATGGTAGACCTTAACAAACTGGGGCAAGTAACCACATTTGAAAGGTTTATCAAATATCATGTGTCAGAACAAGAGAAAACTCTGAAAGTAAGATACCCTGCATGTTCACTAGCTGTTAAAAGGCACGTAGCTTCCACGACAAGTATCTTGGATGTCAACGGAGTAGGAATGTCTAATTTCTCAAAGCCCGCAAGATACCTCTTTACGGAAATTCAGAAAATTGATAGCTACTACTATCCTGAGACTCTAAATCAGCTCTATATTATTAATGCCGGATCTGGGTTTAGGATGCTGTGGAAAGCAATAAAGACATTCCTAGATGTACGCACAGTGGCAAAAATTCAAGTACGAATCATTGAAACTACATATTATGTCATTATCGCATACAATGAAGTTGCGCATACTACATTCTGGTTGGTTGTATTACTCTCCGCCTGTATCTATATTGAACCTGCAAGATTGTTGCTTCAGGTGTTAGGTTCTAATTATCTCAGCGTGCTGCTTGAGGCTATTGATCCAAGTAATTTGCCGACTTTTCTGGGTGGTAATTGTAAATGTTCAGATTATGGAGGTTGTCTAATGAGTGATCGAGGTCCTTGGAAAAATCCAGAAGTGTTAGAAATGATTCAGGTTGTTAACTTGAGAGAAGAGATTGATGGTAAATGCGAAGATGGTGATGTGGCTTCACAAGATTCCTCAATGCCCAAAAAGGTTGACATGCAAAACAAAGATGACAATACTATGAATCTACTTGAGGAGGCAGCTTGTGCGGGATCAGAGGAGGCATGTAGGTTAGCATTGGAAAAAATTGATTGGCTTGAAACTGTTCTTGGAGACATCAAGAATAAAATCAAGACGCTGGAAGATGCACTTCAGGACACCAAGATGGCCTTAAAAGAACTTGCACCGCACATAGAACGGCCAAAAATGAGCCTTGGTCTAATATTTGCCAAAAGGATAATGGGTTATAGGTTTGGGGTTGACAAACAATCAACAATGATAGATTGGTGA 1581 0.4092 MRSPKAEPEDRDVIIARGDGEDESCSGFPGLRLGSGSKSRTKSFHPPIETHWDLNSAAGKKASFSIKSMLSPFTKFRRSKSLQMILEGARDPKDTQIVESFREMLLQEGLLPPKHDDYHTLLRFLRMRDFDMAKSKEMFQSYLKWRKEFRVDMFPKEFNFTEYNEVKKCYPHGFHGVDKYGRPVYIERVGMVDLNKLGQVTTFERFIKYHVSEQEKTLKVRYPACSLAVKRHVASTTSILDVNGVGMSNFSKPARYLFTEIQKIDSYYYPETLNQLYIINAGSGFRMLWKAIKTFLDVRTVAKIQVRIIETTYYVIIAYNEVAHTTFWLVVLLSACIYIEPARLLLQVLGSNYLSVLLEAIDPSNLPTFLGGNCKCSDYGGCLMSDRGPWKNPEVLEMIQVVNLREEIDGKCEDGDVASQDSSMPKKVDMQNKDDNTMNLLEEAACAGSEEACRLALEKIDWLETVLGDIKNKIKTLEDALQDTKMALKELAPHIERPKMSLGLIFAKRIMGYRFGVDKQSTMIDW 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2753 526 SMART sec14_4 162 331 IPR001251 -
Ssu2g2753 526 CDD SEC14 160 373 IPR001251 -
Ssu2g2753 526 MobiDBLite consensus disorder prediction 1 42 - -
Ssu2g2753 526 SUPERFAMILY CRAL/TRIO N-terminal domain 90 153 IPR036273 -
Ssu2g2753 526 SMART CRAL_TRIO_N_2 117 142 IPR011074 -
Ssu2g2753 526 SUPERFAMILY CRAL/TRIO domain 162 399 IPR036865 -
Ssu2g2753 526 PANTHER PHOSPHATIDYLINOSITOL/PHOSPHATIDYLCHOLINE TRANSFER PROTEIN SFH11 346 498 - -
Ssu2g2753 526 PANTHER PHOSPHATIDYLINOSITOL/PHOSPHATIDYLCHOLINE TRANSFER PROTEIN SFH11 36 307 - -
Ssu2g2753 526 MobiDBLite consensus disorder prediction 1 19 - -
Ssu2g2753 526 Gene3D - 70 149 - -
Ssu2g2753 526 Pfam CRAL/TRIO domain 170 306 IPR001251 -
Ssu2g2753 526 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 162 378 IPR001251 -
Ssu2g2753 526 Gene3D - 151 414 IPR036865 -
Ssu2g2753 526 Coils Coil 467 487 - -
Ssu2g2753 526 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN YKL091C-RELATED 346 498 - -
Ssu2g2753 526 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN YKL091C-RELATED 36 307 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2753 Ssu-Chr2 88139810 88149836 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g2753 96 306 Acyl Lipid Metabolism Gene Families AT5G47730 29.091 4.35e-19 87.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2753 - - gmx:100807344 749.584
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2753 2 88139810 88149836 Ssu2g2753 2 88139810 88149836 ECH