Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2709 ATGATGGTAGTGAAAAGTGCGAAGGTAGCGTTGGAGCAGGAAGACGCGAAAGCAATGGCTTCTGCAAAAAGGTGGCTTCCGCTCGAAGCTAACCCTGACGTTATAAATCAGTTCCTTTGGGGGCTTGGGCTTCGAGAGGATGAAGCGGAATGCTGTGACGTTTACGGCTTAGATGAAGAGCTTCTGGAAATGGTTCCAAAGCCCGTTCTTGCCGTGCTTTTTCTTTATCCCATTACCAcccagACTGAAGAAGAGAGGTTGCAgcaggaaaatgaaaaaaagGAATATAACAGTATGGTGTATTTTATGAAGCAAACTGTGGGTAATGCTTGCGGGACAATTGGACTGCTTCATGCTCTTGGCAACTTAACTTCTGAAGTCAAGCTCGTTGAGGGGTCGTTCttcgataatttttttaaatctactGCAAGCTTGGATCCATTGCAGCGTGCAACATTTCTTGAGAATGACAGAGAAATGGAAGTGGCTCATTCAGTGGCAGCGACTGCTGGTGATACAGAGGCATCAGACAATGCAGATGCACATTTCGTATGCTTTGCTTGTGTGAATGATGAACTTCATGAGCTTGATGGAAGAAAGTCAGGGCCAATATCTCATGGTCCATCTTCACCAAGTACTTTGTTAAGGGATGCAGCTAAAGTAATACAGAGCATAATCCAGAAAAATCCAGACTCCCTCAACTTCAATGTCATTGCCTTGTGTAAGAAATCTGGGTAG 738 0.4241 MMVVKSAKVALEQEDAKAMASAKRWLPLEANPDVINQFLWGLGLREDEAECCDVYGLDEELLEMVPKPVLAVLFLYPITTQTEEERLQQENEKKEYNSMVYFMKQTVGNACGTIGLLHALGNLTSEVKLVEGSFFDNFFKSTASLDPLQRATFLENDREMEVAHSVAATAGDTEASDNADAHFVCFACVNDELHELDGRKSGPISHGPSSPSTLLRDAAKVIQSIIQKNPDSLNFNVIALCKKSG 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2709 245 Gene3D - 19 243 IPR036959 GO:0004843|GO:0006511
Ssu2g2709 245 Pfam Ubiquitin carboxyl-terminal hydrolase, family 1 25 226 IPR001578 GO:0004843|GO:0006511
Ssu2g2709 245 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 20 243 IPR001578 GO:0004843|GO:0006511
Ssu2g2709 245 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 20 243 - -
Ssu2g2709 245 PRINTS Ubiquitin C-terminal hydrolase (C12) family signature 177 188 IPR001578 GO:0004843|GO:0006511
Ssu2g2709 245 PRINTS Ubiquitin C-terminal hydrolase (C12) family signature 65 77 IPR001578 GO:0004843|GO:0006511
Ssu2g2709 245 PRINTS Ubiquitin C-terminal hydrolase (C12) family signature 193 203 IPR001578 GO:0004843|GO:0006511
Ssu2g2709 245 PRINTS Ubiquitin C-terminal hydrolase (C12) family signature 27 44 IPR001578 GO:0004843|GO:0006511
Ssu2g2709 245 PRINTS Ubiquitin C-terminal hydrolase (C12) family signature 105 122 IPR001578 GO:0004843|GO:0006511
Ssu2g2709 245 CDD Peptidase_C12_UCH_L1_L3 25 240 - -
Ssu2g2709 245 SUPERFAMILY Cysteine proteinases 23 243 IPR038765 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2709 Ssu-Chr2 87340831 87343680 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2709 K05609 - gmx:100527755 421.394