Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2677 ATGGAAGATCCATTTATTCTTGCGTCAGAAACAActtTCAGTGTCAATGATGTTGAAGCATTATATGAGCTTTTTAAGAGCATTAGCAAGTCTGTCATTGATGATGGACTAATAAGCAAGGAAGAATTTCAATTggcaattttcaataataaggaaaaggaaaatcTCTTTACAAGTCGGATCTTTGATCTATTTGACGTCAAGAAAAAAGGAGTGATTGACTTTGGTGATTTCGTTAGAGCACTCAATATCTTCCACCCAAATGCACCAATAGAAGTCAAGATAGATTTTTCATTTAGGCTCTACGATTTAGACAATACGGGATTTATAGAGCACCATGAGGTCAAGCAAATGGTAAATGCACTTCTTTGTGAAGCTGAAATTAAGTTGTCAGATGAAATGATAGAAACAATTATTAACAAGACTTTCTTGGATGCTGATCCTAATCAAGATGGAAAAATAGACAAATTTGAGTGGCAAAACTTTGTTGTTGAAAACCCCTCATTATTAAAAGTCATGACACTACCCTACTTGAGGGACATAACAACTGCttttccaagttttgtatttCACTCAAAGGTAGAGGACGAAATTGTTGAATGA 603 0.3217 MEDPFILASETTFSVNDVEALYELFKSISKSVIDDGLISKEEFQLAIFNNKEKENLFTSRIFDLFDVKKKGVIDFGDFVRALNIFHPNAPIEVKIDFSFRLYDLDNTGFIEHHEVKQMVNALLCEAEIKLSDEMIETIINKTFLDADPNQDGKIDKFEWQNFVVENPSLLKVMTLPYLRDITTAFPSFVFHSKVEDEIVE 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2677 200 ProSiteProfiles EF-hand calcium-binding domain profile. 53 88 IPR002048 GO:0005509
Ssu2g2677 200 PANTHER CALCINEURIN B 2 199 IPR045198 GO:0005509|GO:0019722|GO:0019900
Ssu2g2677 200 Pfam EF-hand domain pair 94 162 IPR002048 GO:0005509
Ssu2g2677 200 CDD EFh 94 163 IPR002048 GO:0005509
Ssu2g2677 200 PRINTS Recoverin family signature 108 126 - -
Ssu2g2677 200 PRINTS Recoverin family signature 61 82 - -
Ssu2g2677 200 PRINTS Recoverin family signature 154 174 - -
Ssu2g2677 200 ProSiteProfiles EF-hand calcium-binding domain profile. 134 169 IPR002048 GO:0005509
Ssu2g2677 200 SUPERFAMILY EF-hand 7 189 IPR011992 -
Ssu2g2677 200 Gene3D - 4 197 - -
Ssu2g2677 200 SMART efh_1 94 122 IPR002048 GO:0005509
Ssu2g2677 200 SMART efh_1 138 166 IPR002048 GO:0005509
Ssu2g2677 200 SMART efh_1 57 85 IPR002048 GO:0005509
Ssu2g2677 200 ProSitePatterns EF-hand calcium-binding domain. 147 159 IPR018247 -
Ssu2g2677 200 ProSiteProfiles EF-hand calcium-binding domain profile. 90 125 IPR002048 GO:0005509
Ssu2g2677 200 PANTHER CALCINEURIN B-LIKE PROTEIN 2 199 - -
Ssu2g2677 200 ProSitePatterns EF-hand calcium-binding domain. 103 115 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2677 Ssu-Chr2 86977031 86979983 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g2677 2 199 EF-hand Containing Proteins AT4G17615 73.737 8.95e-107 303
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2677 K06268 - gmx:100779020 352.829
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2677 2 86977031 86979983 Ssu2g2677 2 86977031 86979983 ECH