LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ssu2g2671	atggctctAACATTTTGCTCTTCAATTTCTCTCATCAATCAGAAAGAAACCAAACTCCCAAAAGCAAAAGACGACGTTCCTACCAAAGTTTTCTTTGCAAAAACCAAGCCATCTTTCCGTCTCCGAGCGAAGAGTTCCATGCAAGCACATGTCACACGGAACAACAACTTCAACTCCGAAGTAATGATAAACGAGAAAATGGAGAAGGTTCACGTGCCATCGGTTGCTCACAGCCACAATGATTCAATGAGAGTGCCGGTGTTTGTGATGTTGCCGTTGGACACGGTTACAATGGGAGGGACTTTGAATAAGCCGAGAGCAATGAATGCTAGTTTGATGGCCCTGAAGAGTGCGGGAGTGGAAGGAGTAATGGTGGATGCTTGGTGGGGTTTGGTGGAAAAAGAGGGACCCTTGAAGTACAACTGGGAAGCCTACGCTGAGCTTGTGCAGATGGTACAAAAGCATGGCTTGAAGCTTCAGGTTGTCATGTCTTTCCATCAATGTGGAGGAAATGTTGGAGACTCGTGCAGtattccTCTACCTCCATGGGTGCTGGAAGAAATCAGCAAGAACCCTGATCTGGTTTACACAGACAGATCAGGGAGGAGGAATCCTGAGTACATCTCCTTGGGCTGTGATTCAATGCCTGTTCTGCGGGGAAGGACGCCCCTTCAAGTGTACTCCGATTACATGAGGAGCTTCCGTGACAGATTCAGAGATTATTTGGGCAGTGTTATCATTGAAATTCAAGTGGGGATGGGTCCTTGTGGGGAGCTGAGATATCCGTCTTATCCAGAAAGCAATGGAACTTGGAGGTTTCCTGGAATTGGAGAATTCCAGTGCTATGACAAGTACATGAGAGCTTCCTTGGAAGCATCAGCAGAGGCCATTGGGAAGAAAGAGTGGGGAAGAGGTGGACCCCATGACTCAGGCCAGTACAACCAATTTCCAGAGGATACTGGATTTTTCAAAAGGGAAGGAACATGGAACTCAGAATATGGACAGTTCTTCCTTGACTGGTACTCCACCAAACTGCTTGAACACGGTGAGAGAATCCTTGTATCAGCCAAAGGCATATTCAACTCTTCTGGGGTGACACTATCTGCCAAAGTAGCTGGAATTCATTGGCACTACAAAGCACGGTCACACGCGGCTGAACTAACTGCAGGCTACTACAACACGCGGTTTCGTGATGGGTACCTACCAATAGCACAAATGCTGGCAAAACATGGAGTTGTGTTCAACTTCACCTGCATGGAAATGAGGGACGGAGAGCAACCTGAACATGCTAATTGTTCCCCTGAGGGGTTGGTTCATCAAGTGAAGATGGCAACCAGAACAGCAGGAGCAGAACTCGCTGGGGAGAATGCACTCGAGAGATATGATGCAGGTGCGTTTGCTCAAGTTTTGTCAACAAGTAACTCTGGTTCTGGATTGGCTGCATTTACTTATCTGAGAATGAATAAGAGGTTGTTTGAGGGAGACAATTGGCGGCACTTTGTGGAGTTTGTGAAAAGCGTGTCTGAAGGTGGTAGGAGACAAAGGCTTCCGCACTCTGATTCATGTGGGACCCATCTTTACGTTGGACACATCACAGCCACAGGAATTCAGAAGCAGCAAGCTCAAGAGCTTGCTCTTGTGTGA	1644	0.4696	MALTFCSSISLINQKETKLPKAKDDVPTKVFFAKTKPSFRLRAKSSMQAHVTRNNNFNSEVMINEKMEKVHVPSVAHSHNDSMRVPVFVMLPLDTVTMGGTLNKPRAMNASLMALKSAGVEGVMVDAWWGLVEKEGPLKYNWEAYAELVQMVQKHGLKLQVVMSFHQCGGNVGDSCSIPLPPWVLEEISKNPDLVYTDRSGRRNPEYISLGCDSMPVLRGRTPLQVYSDYMRSFRDRFRDYLGSVIIEIQVGMGPCGELRYPSYPESNGTWRFPGIGEFQCYDKYMRASLEASAEAIGKKEWGRGGPHDSGQYNQFPEDTGFFKREGTWNSEYGQFFLDWYSTKLLEHGERILVSAKGIFNSSGVTLSAKVAGIHWHYKARSHAAELTAGYYNTRFRDGYLPIAQMLAKHGVVFNFTCMEMRDGEQPEHANCSPEGLVHQVKMATRTAGAELAGENALERYDAGAFAQVLSTSNSGSGLAAFTYLRMNKRLFEGDNWRHFVEFVKSVSEGGRRQRLPHSDSCGTHLYVGHITATGIQKQQAQELALV	547

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ssu2g2671	547	Pfam	Glycosyl hydrolase family 14	88	503	IPR001554	GO:0000272\|GO:0016161
	Ssu2g2671	547	SUPERFAMILY	(Trans)glycosidases	84	510	IPR017853	-
	Ssu2g2671	547	PANTHER	-	1	547	IPR001554	GO:0000272\|GO:0016161
	Ssu2g2671	547	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	119	133	IPR001554	GO:0000272\|GO:0016161
	Ssu2g2671	547	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	437	459	IPR001554	GO:0000272\|GO:0016161
	Ssu2g2671	547	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	254	276	IPR001554	GO:0000272\|GO:0016161
	Ssu2g2671	547	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	382	393	IPR001554	GO:0000272\|GO:0016161
	Ssu2g2671	547	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	400	423	IPR001554	GO:0000272\|GO:0016161
	Ssu2g2671	547	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	140	158	IPR001554	GO:0000272\|GO:0016161
	Ssu2g2671	547	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	365	381	IPR001554	GO:0000272\|GO:0016161
	Ssu2g2671	547	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	329	348	IPR001554	GO:0000272\|GO:0016161
	Ssu2g2671	547	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	162	183	IPR001554	GO:0000272\|GO:0016161
	Ssu2g2671	547	PANTHER	BETA-AMYLASE	1	547	-	-
	Ssu2g2671	547	Gene3D	Glycosidases	75	537	-	-
	Ssu2g2671	547	ProSitePatterns	Beta-amylase active site 1.	166	174	IPR018238	GO:0000272\|GO:0016161

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ssu2g2671	Ssu-Chr2	86913481	86916141	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ssu2g2671	1	547	Glycoside Hydrolase	AT4G17090	71.688	0.0	825

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ssu2g2671	K01177		-	gmx:100786079	1021.92

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Ssu2g2671	2	86913481	86916141	Ssu2g2671	2	86913481	86916141	ECH