Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2655 ATGGCTTGTATGAAGAGGCATTGTTGCTCTTTCTTCAGATGGTTGTGTAGAGGACTTGTTAGGATGTACTCTGGGTTTGGTCTTATGGACTCTGCGCGCAATGTGTTTGAAGGTAATCTGAAAGACTGTGGTGATCAGTGTTTCAATTCCATGATAGATGGTTATGTTCGGGCCGGTCAGCTGGAAAAAGCTCAAGAGTTGTTTGACATGATACCTGTTCGGAACAAGGTTGCATCGACTTGCATGATTGCTGGCTATCTTAGTGCTGGGCAAGTATTGAAGGCTTGCAATCTGTTTAATGACATGTCTGAAAGGGATTCCATTGCGTGGACAAAGATGATTTATGGGTATGTGCAGAATGAACTCATTGCTGAAGCCATCAGCTTATTTGCTGAGATGATGGTTCATGGTGTTTCTCCTTTGAATTCTACATATGCTGTTCTATTTGGAGCCATGGGTTCAGTTGCATATCTTGATCAGGGGCGGCAATTACATGGTATGCAGTTGAAGACAGTGtatgaaaatgatttgattCTTGAGAACTCTCTAATTGCAATGTATGCAAAATGTGGGGAGATAGATGATGCATATAGGATATTCTCTAACATGACTTACCGGGACAAAATTTCTTGGAACACCATGATCATGGGCCTTTCAGATCATGGGAGGGCCAGTGAAGCTTTAAAAGTGTATGAAACTATGCTTGAATTTGGAATTTACCCGGATGGCCTTACTTTCCTGGGTGTCCTGACAGCATGTGCTCATGCAGGTCTTGTTGATAAAGGGTGGGAGTTATTTACTGCCATGGTTAATGCTTATGCTATTCAACCTGGCTTGGAGCACTATATTAGTATTATCAATCTTCTGGGCCGAGCAGGAAAGGTGAAGGATGCAGAGGAGTTTGTCTTGAAGCTACCTGTTGAACCAAATCATGCCATTTGGGGGGCACTGATTGGAGTATGTGGGTTGAGTAAAACCAATGCAGATGTTGCTAGGCGTGCAGCCAAACGACTGTTTGAGTTGGATCCTTTAAATGCACCAGGCCATGTGGCCCTTTGTAACATATATGCCGCAAATGATAGGCACATTGAGGATACAagtttaagaaaagaaatgaggaTGAAAGGTGTGAGGAAGGCACCCGGATGTAGTTGGATGTTGGTGAAGGGGACAGTTCATATTTTCTTCTCAGACGATAAATTACATCCGCGGGTTTAA 1218 0.422 MACMKRHCCSFFRWLCRGLVRMYSGFGLMDSARNVFEGNLKDCGDQCFNSMIDGYVRAGQLEKAQELFDMIPVRNKVASTCMIAGYLSAGQVLKACNLFNDMSERDSIAWTKMIYGYVQNELIAEAISLFAEMMVHGVSPLNSTYAVLFGAMGSVAYLDQGRQLHGMQLKTVYENDLILENSLIAMYAKCGEIDDAYRIFSNMTYRDKISWNTMIMGLSDHGRASEALKVYETMLEFGIYPDGLTFLGVLTACAHAGLVDKGWELFTAMVNAYAIQPGLEHYISIINLLGRAGKVKDAEEFVLKLPVEPNHAIWGALIGVCGLSKTNADVARRAAKRLFELDPLNAPGHVALCNIYAANDRHIEDTSLRKEMRMKGVRKAPGCSWMLVKGTVHIFFSDDKLHPRV 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2655 405 Gene3D Tetratricopeptide repeat domain 161 400 IPR011990 GO:0005515
Ssu2g2655 405 SUPERFAMILY TPR-like 106 361 IPR011990 GO:0005515
Ssu2g2655 405 Pfam PPR repeat 47 71 IPR002885 -
Ssu2g2655 405 Pfam PPR repeat 181 204 IPR002885 -
Ssu2g2655 405 Pfam PPR repeat 282 302 IPR002885 -
Ssu2g2655 405 Pfam PPR repeat 80 105 IPR002885 -
Ssu2g2655 405 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 106 140 IPR002885 -
Ssu2g2655 405 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 207 241 IPR002885 -
Ssu2g2655 405 Pfam PPR repeat family 106 152 IPR002885 -
Ssu2g2655 405 Pfam PPR repeat family 207 254 IPR002885 -
Ssu2g2655 405 TIGRFAM PPR: pentatricopeptide repeat domain 209 242 IPR002885 -
Ssu2g2655 405 TIGRFAM PPR: pentatricopeptide repeat domain 80 106 IPR002885 -
Ssu2g2655 405 TIGRFAM PPR: pentatricopeptide repeat domain 109 140 IPR002885 -
Ssu2g2655 405 TIGRFAM PPR: pentatricopeptide repeat domain 47 71 IPR002885 -
Ssu2g2655 405 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 44 78 IPR002885 -
Ssu2g2655 405 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 13 396 - -
Ssu2g2655 405 PANTHER PENTATRICOPEPTIDE (PPR) REPEAT PROTEIN 13 396 - -
Ssu2g2655 405 Gene3D Tetratricopeptide repeat domain 4 73 IPR011990 GO:0005515
Ssu2g2655 405 Gene3D Tetratricopeptide repeat domain 74 160 IPR011990 GO:0005515
Ssu2g2655 405 Pfam E motif 327 386 IPR046848 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2655 Ssu-Chr2 86496742 86498105 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g2655 75 403 Glycoside Hydrolase AT3G49170 31.915 1.35e-65 222
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2655 - - gmx:102669560 732.25