Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2441 ATGACAGGGTCATCGAGAAAAGGGAGCGTGTTCTTAGAGGAAAGCAGTGTCCATGGCCGAAAGTTCGGAAAGTTAAAGAAAGACGAATTCGACGGGTATAACTCCGATAACCATCCACGAAAAAACAGCCCCATCACGTTGGACGCGCCTCATTTGGATCCTCAAATGGCAGCAGATAACGCCCCCTACGACCCCTCCCTCTCTCCCCTATCCAAATCTCCATGGTCCTCTCACATGAACGAAGACGCTTTCGTGTCCAATGAAAACGAGGCCCTCGTGGGGTCCCTAGTCCGCGAAGAGGGTCACATTTATTCCCTCGCCGCAACCAAGGACTTGTTATACACGGGTTCGGATAGTAAAAACATTCGCGTGTGGAAGAACCAAAAGGAGTTCACGGGGTTCAAATCCAACAGCGGGTTAGTGAAAGCCATTGTGATTGCGGACGAGAAAATCCTCACGGGACACCAAGACGGAAAAATCAGGGTTTGGAAAGTGTCCGGGAAAAACGAGCAACAACACAAGCGCGTGGCGACGTTGCCAACGTTAAGAAACTACATCAAATGCTCGATGAAACCGAGCAACTATGTGGAAGTGAGACGACACCGTAACGTGTTATGGATCAAACACTACGACGCCATCTCGTGTCTCAGCTTAACGGAGGACCGTTCTCTTATATACTCCGCCTCGTGGGACAAAACTTTCAAAGTGTGGCGAGCGTCGAATTTCAAGTGTTTAGAATCCGTAACGGCGCACGACGACGCCGTTAACGCGCTCGTCGTGGGGTTGGATGGTTTGGTTTTCACTGGGTCCGCTGACGGCACCGTTAAGATTTGGCGGCGCGAGGTGCAGGGAAAGGGGACGAAGCATTTCTTCTCGCAGACCCTGCTGAAGCAGGAGTGCGCCGTAACGGCGTTAGCGGTTGACGGGGAGGGGAATTATTTGTACGCTGGTTCTTCCGAAGGGTTGGTGAATTTTTGGGTGCGGGAGACGAATTTGGAGCACAAGGGGGTTCTGAGGGGGCACAAGTTGGCGGTGCTGTGTTTGGCTACGGCGGGGAGTTTGGCGTTCAGTGGGTCTGCTGACATGGCGATATGCGTGTGGAAGAGGACGCTGAGCGATGAGCACACGTGTGTCAATGTTTTGTCGGGGCACACTGGGCCCGTGAAGTGTCTCGCGGTGGAGAGGGACCACGACGCGATGTGCAACGAGCGGCGGTGGATTTTGTACAGCGGGAGTTTGGATAAGTCGGTGAAGGTGTGGAAGGTGTCGGAGAGTGCTTCCTCTGCGGCGCAGAGCAACGCGCAGCCGCCGCGGCTGAGTGTGGATCACTTTCCGAGACTCTCGTCGTTGCGGAAAATGGGGTCCAGGAGATACTAG 1377 0.5389 MTGSSRKGSVFLEESSVHGRKFGKLKKDEFDGYNSDNHPRKNSPITLDAPHLDPQMAADNAPYDPSLSPLSKSPWSSHMNEDAFVSNENEALVGSLVREEGHIYSLAATKDLLYTGSDSKNIRVWKNQKEFTGFKSNSGLVKAIVIADEKILTGHQDGKIRVWKVSGKNEQQHKRVATLPTLRNYIKCSMKPSNYVEVRRHRNVLWIKHYDAISCLSLTEDRSLIYSASWDKTFKVWRASNFKCLESVTAHDDAVNALVVGLDGLVFTGSADGTVKIWRREVQGKGTKHFFSQTLLKQECAVTALAVDGEGNYLYAGSSEGLVNFWVRETNLEHKGVLRGHKLAVLCLATAGSLAFSGSADMAICVWKRTLSDEHTCVNVLSGHTGPVKCLAVERDHDAMCNERRWILYSGSLDKSVKVWKVSESASSAAQSNAQPPRLSVDHFPRLSSLRKMGSRRY 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2441 458 Gene3D - 84 200 IPR015943 GO:0005515
Ssu2g2441 458 ProSiteProfiles Trp-Asp (WD) repeats profile. 248 278 IPR001680 GO:0005515
Ssu2g2441 458 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 248 278 - -
Ssu2g2441 458 Gene3D - 201 451 IPR015943 GO:0005515
Ssu2g2441 458 Pfam WD domain, G-beta repeat 209 237 IPR001680 GO:0005515
Ssu2g2441 458 Pfam WD domain, G-beta repeat 100 126 IPR001680 GO:0005515
Ssu2g2441 458 Pfam WD domain, G-beta repeat 127 164 IPR001680 GO:0005515
Ssu2g2441 458 Pfam WD domain, G-beta repeat 243 278 IPR001680 GO:0005515
Ssu2g2441 458 Pfam WD domain, G-beta repeat 376 421 IPR001680 GO:0005515
Ssu2g2441 458 ProSiteProfiles Trp-Asp (WD) repeats profile. 206 247 IPR001680 GO:0005515
Ssu2g2441 458 SUPERFAMILY WD40 repeat-like 96 426 IPR036322 GO:0005515
Ssu2g2441 458 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 4 436 IPR045182 -
Ssu2g2441 458 SMART WD40_4 331 368 IPR001680 GO:0005515
Ssu2g2441 458 SMART WD40_4 288 327 IPR001680 GO:0005515
Ssu2g2441 458 SMART WD40_4 241 279 IPR001680 GO:0005515
Ssu2g2441 458 SMART WD40_4 89 126 IPR001680 GO:0005515
Ssu2g2441 458 SMART WD40_4 127 164 IPR001680 GO:0005515
Ssu2g2441 458 SMART WD40_4 200 238 IPR001680 GO:0005515
Ssu2g2441 458 SMART WD40_4 374 421 IPR001680 GO:0005515
Ssu2g2441 458 CDD WD40 100 421 - -
Ssu2g2441 458 MobiDBLite consensus disorder prediction 27 74 - -
Ssu2g2441 458 PANTHER BNAANNG11810D PROTEIN 4 436 - -
Ssu2g2441 458 PRINTS G protein beta WD-40 repeat signature 408 422 IPR020472 -
Ssu2g2441 458 PRINTS G protein beta WD-40 repeat signature 266 280 IPR020472 -
Ssu2g2441 458 PRINTS G protein beta WD-40 repeat signature 151 165 IPR020472 -
Ssu2g2441 458 ProSiteProfiles Trp-Asp (WD) repeats profile. 381 430 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2441 Ssu-Chr2 82711995 82713371 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g2441 145 455 Acyl Lipid Metabolism Gene Families AT3G18860 25.369 1.78e-08 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2441 - - gmx:100778593 832.402
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2441 2 82711995 82713371 Ssu2g2441 2 82711995 82713371 ECH