LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ssu2g2412	ATGTGGATGTACTTGAGGCCGTTCTTTTGCAAGGTTAACCTGTTCAACGGGTTAACCTTGCAAGTGCAAGCACGTTCCTATGCCCGTCGTCGTGAACCCTTTCCCACCAAAGTTTCTCACTACCTCAACCGTGCCAAACTCATTGACTCCATTCGACTCACTCTACGCTCCAAAACCCATAACTCCTCCCTTCCCTCTCTCATAAACCACCGTCTTTTGGACTCTTTCGTGGTCACTCATGCCCTGCGTTCTGCCCCGTCTGCAGATTCTGCTCTCTCCCTTGTCCATGCCCTTGAAAAACATTCCCGTTTTTCCCATACCCACAACACTCTCCATGCACTTGCCACTGTTCTTGCCCAGTCTGGTCGATGCTCTGAGCTCAAATCTCTCCTTGATGCTATCCGAGCCAACCGGTTCGGCACTGTTCGGATCAGCTTTATGAATCTCATGCAGTGGCATGCTGCAGCTAGGGACCTTGACACTGTTCTTCAAGTGTGGGAACAGTATACACTTGAGAATAACCATCTGTGTACTGAATCTTATAACATTGTTATGGCTCTCTATGCTCAAATGGGAAAGAACTCTGAGGCTGTTCGAGTTTTTCACAGGATGATTGATGAAGGGTCCCTTCCGAATTGCAGAAGCTATACTGTAATAATCGAGCACCTTGTAAAGTCCCGGAAGTTATCTGAAGCAATGGAGGTTTTTAACCTGTTGCAATTGATGAGGATCAAACGCACTTTGAAACAGTACTCCGTTCTGCTTGAGGGTTTTGTAGGTAGCAAACAGTTTGATGAAGTCAGAGTTTTAGTTGATGAAATGCAGGTTGATGGAATATTGCCTAGTAGAGGCGTGAGTTTGTTGCTGCAGCAGATGCAGGAGGAAGGAATTCTTAAAGGCAAGGAGCAATTATTAAGAGAAATATTGCCAGATGAGAGAATCAAGAGTGTAAGTTATTCTGTTGATAGTGGTGATGAGGATGAGAAGAATGAGAATAAGGACGAAGATGAGAATGTAAGTGGTgcttgtcaatgtgatcatattGATGGGATTCATTTAAAACCATGGCTGGACCCACGGGCTTTGGCCAGTGCCTTGCAGAATTGGAATCCTGATGAGGTAGCAGCACTAGAGGGTGCAAACTTTGTATGGACAACAAGGTTGGTCTGTAAGATGCTTAGAAATTTCAAAACACCAGAAGCTGCATGGAATTTCTTCTGCTGGGTTGCTAATCAACGTGGATTTACTCATGACATATACACCGTACAAAGAATCATGACCCTTCTAGCACACCATGGACGTACTGAGTTCGTTGATCAACTCATCTCCAAGATCAGAATGGAGGGAATGAGACTGCCATTCAGCACTATCAGGCTAATCATTGACTTTTATGGGATTTCAAAAAATGCTGATGCTGCTCTGAAGGTTTTCAATGATGATCGAATACTTTGTGGGCCCCTATCAAAGGTTAACCTTATGCTTCTGTATTCCTCTCTTCTAAGAACATTGACAAAGTGTGGAAGAAATTCTGATGCCCTGGATATGCTTgatgatatgattttaaatggtATTTGCCCAGATATCCAAACATTTTCAGGCCTAATGCACTCTTTTTCACAGCTTGGAGACATAAAAACAGTGCAGAAGCTCTTTGTAATGGTTAGGCAGAGCGGTCTAGAGCCAGATGCTTATTTGTTTAAGGTATTAATCCAAGGTTATTGCAAGTCAAAAAGAGCTGCACTAGCATGGAGGCTATTTGAAGACATGAAGAATTCAGGTTTGGTGCCTGACTCTGCCACCAAAGAGTTGCTAGTAAAGAGCCTATGGAAAGAGGGGAGACGAAGAGATGCTGCAGCCGTGGAAGAGAATTGTGAGGAAATAAATACGGTCCTTCCACTTGCATTGCAGGGTCATGTATGGACTGTCAGCTCTGCAGATCTCACAagagtttataatatttattcaaattctttTGCTTAA	1980	0.4268	MWMYLRPFFCKVNLFNGLTLQVQARSYARRREPFPTKVSHYLNRAKLIDSIRLTLRSKTHNSSLPSLINHRLLDSFVVTHALRSAPSADSALSLVHALEKHSRFSHTHNTLHALATVLAQSGRCSELKSLLDAIRANRFGTVRISFMNLMQWHAAARDLDTVLQVWEQYTLENNHLCTESYNIVMALYAQMGKNSEAVRVFHRMIDEGSLPNCRSYTVIIEHLVKSRKLSEAMEVFNLLQLMRIKRTLKQYSVLLEGFVGSKQFDEVRVLVDEMQVDGILPSRGVSLLLQQMQEEGILKGKEQLLREILPDERIKSVSYSVDSGDEDEKNENKDEDENVSGACQCDHIDGIHLKPWLDPRALASALQNWNPDEVAALEGANFVWTTRLVCKMLRNFKTPEAAWNFFCWVANQRGFTHDIYTVQRIMTLLAHHGRTEFVDQLISKIRMEGMRLPFSTIRLIIDFYGISKNADAALKVFNDDRILCGPLSKVNLMLLYSSLLRTLTKCGRNSDALDMLDDMILNGICPDIQTFSGLMHSFSQLGDIKTVQKLFVMVRQSGLEPDAYLFKVLIQGYCKSKRAALAWRLFEDMKNSGLVPDSATKELLVKSLWKEGRRRDAAAVEENCEEINTVLPLALQGHVWTVSSADLTRVYNIYSNSFA	659

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ssu2g2412	659	Gene3D	Tetratricopeptide repeat domain	489	647	IPR011990	GO:0005515
	Ssu2g2412	659	ProSiteProfiles	Pentatricopeptide (PPR) repeat profile.	492	526	IPR002885	-
	Ssu2g2412	659	TIGRFAM	PPR: pentatricopeptide repeat domain	251	282	IPR002885	-
	Ssu2g2412	659	TIGRFAM	PPR: pentatricopeptide repeat domain	180	213	IPR002885	-
	Ssu2g2412	659	TIGRFAM	PPR: pentatricopeptide repeat domain	566	598	IPR002885	-
	Ssu2g2412	659	TIGRFAM	PPR: pentatricopeptide repeat domain	496	528	IPR002885	-
	Ssu2g2412	659	TIGRFAM	PPR: pentatricopeptide repeat domain	215	245	IPR002885	-
	Ssu2g2412	659	ProSiteProfiles	Pentatricopeptide (PPR) repeat profile.	177	211	IPR002885	-
	Ssu2g2412	659	Gene3D	Tetratricopeptide repeat domain	378	487	IPR011990	GO:0005515
	Ssu2g2412	659	Gene3D	Tetratricopeptide repeat domain	80	345	IPR011990	GO:0005515
	Ssu2g2412	659	Pfam	PPR repeat family	561	608	IPR002885	-
	Ssu2g2412	659	Pfam	PPR repeat family	178	224	IPR002885	-
	Ssu2g2412	659	ProSiteProfiles	Pentatricopeptide (PPR) repeat profile.	562	596	IPR002885	-
	Ssu2g2412	659	PANTHER	OS01G0167750 PROTEIN	3	658	IPR044175	-
	Ssu2g2412	659	MobiDBLite	consensus disorder prediction	319	339	-	-
	Ssu2g2412	659	Pfam	PPR repeat	251	279	IPR002885	-
	Ssu2g2412	659	Pfam	PPR repeat	496	524	IPR002885	-
	Ssu2g2412	659	ProSiteProfiles	Pentatricopeptide (PPR) repeat profile.	527	561	IPR002885	-
	Ssu2g2412	659	ProSiteProfiles	Pentatricopeptide (PPR) repeat profile.	247	281	IPR002885	-

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ssu2g2412	413	644	Glycosyltransferase	AT1G05670	28.205	1.37e-15	78.6

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ssu2g2412	-		-	gmx:100779372	1144.03

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Ssu2g2412	2	81958888	81960867	Ssu2g2412	2	81958888	81960867	ECH