Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2249 ATGGCTCTGTTCTCACATCACCGACACCCTTCTGAAGCGCTCTTGGGCTTCGCGCTCCTCCTCGTATTAAGAGGAGTTTCAGGGGCAACATTTACTTTTGTAAACAAGTGCGATTACACGGTGTGGCCAGGGATTTTAGGAACACCAGACCTCGGAAGCACAGGCTTTGAACTTAGTAAGGGAAGTTCCAGAAGCTTCCAGGCTCCGACCGGTTGGTCCGGTAGATTCTGGGGCAGAACCGGTTGCCAATTCGACGGTTCGGGGCCCGGAACCTGCGCCACCGCCGACTGCGGCTCCGGTGAGGTCAACTGCAACGGCGCCGGAGCCTCCCCGCCGGCGACCCTCGCCGAGTTCACACTCGGCACCGGCTCCATGGACTACTACGACGTCAGCCTCGTCGACGGCTACAATTTGCCGATGATGGTGGTCGCCAGCGGCGGGTCGGGCTCGTGCGCCGCCACCGGGTGCGGCGCGGACCTCAACCGGCGGTGCCCGTCGGAATTGAGAGCGGAAGGCGGCGACGCCTGCCAGAGCGCTTGCGCCGCGTTTGGGAAACCCGAGTATTGTTGCAACGGTGCGTTTAGTAACCCTTCCACGTGCAAGCCTTCTATCTACTCGCAAATTTTCAAGTCCGCATGTCCCAAGGCCTACAGCTACGCCTACGATGACGCCACTAGCACGTTCACGTGTTCCGGCGCTGActacaaaataacattttgtcCCTCTTCTCCAAGtttAAAGTCTTCAGCGGATTCGAGTCCAAAGGGAACGGATTCGGGGTCTGGGTCTGGGTCTGGGGCAGGTTCGTCGGTTGAACAATCTGAATTAGCTTCGACTTCGTGGTTAGCCGACATGGCCACGGCGACAGGGGCTTCCACACGAACACGGCCTTTAGTTACTTCAAAGGCCTCTTTTTCGGTGGTGGttgttttcattctttctcttttggtcGCGTAG 957 0.5622 MALFSHHRHPSEALLGFALLLVLRGVSGATFTFVNKCDYTVWPGILGTPDLGSTGFELSKGSSRSFQAPTGWSGRFWGRTGCQFDGSGPGTCATADCGSGEVNCNGAGASPPATLAEFTLGTGSMDYYDVSLVDGYNLPMMVVASGGSGSCAATGCGADLNRRCPSELRAEGGDACQSACAAFGKPEYCCNGAFSNPSTCKPSIYSQIFKSACPKAYSYAYDDATSTFTCSGADYKITFCPSSPSLKSSADSSPKGTDSGSGSGSGAGSSVEQSELASTSWLADMATATGASTRTRPLVTSKASFSVVVVFILSLLVA 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2249 318 SMART tha2 31 241 IPR001938 -
Ssu2g2249 318 Gene3D Thaumatin 29 241 IPR037176 -
Ssu2g2249 318 MobiDBLite consensus disorder prediction 246 271 - -
Ssu2g2249 318 CDD TLP-PA 30 240 - -
Ssu2g2249 318 PANTHER THAUMATIN-LIKE PROTEIN 1 20 260 - -
Ssu2g2249 318 ProSiteProfiles Thaumatin family profile. 28 241 IPR001938 -
Ssu2g2249 318 PANTHER OS03G0233200 PROTEIN 20 260 IPR001938 -
Ssu2g2249 318 Pfam Thaumatin family 35 241 IPR001938 -
Ssu2g2249 318 PRINTS Pathogenesis-related protein signature 88 117 IPR001938 -
Ssu2g2249 318 PRINTS Pathogenesis-related protein signature 30 42 IPR001938 -
Ssu2g2249 318 PRINTS Pathogenesis-related protein signature 54 63 IPR001938 -
Ssu2g2249 318 PRINTS Pathogenesis-related protein signature 126 142 IPR001938 -
Ssu2g2249 318 PRINTS Pathogenesis-related protein signature 75 86 IPR001938 -
Ssu2g2249 318 PRINTS Pathogenesis-related protein signature 231 240 IPR001938 -
Ssu2g2249 318 SUPERFAMILY Osmotin, thaumatin-like protein 29 242 IPR037176 -
Ssu2g2249 318 ProSitePatterns Thaumatin family signature. 88 104 IPR017949 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2249 Ssu-Chr2 79043591 79045101 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g2249 15 265 Receptor kinase-like Gene Family AT5G38280 46.642 3.74e-74 239
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2249 - - gmx:100815652 514.612
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2249 2 79043591 79045101 Ssu2g2249 2 79043591 79045101 ECH