Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2245 ATGGCAAAGAGAGTGACTATAGTTTCAGAGTGTTTCTCTGCTTTCCTCCTGCTTTATTTGTGTGGCACGGTAGTGTCCGTCAAGTACAATACTGGAGCAAGTGTTGTGCCAGGCAAATTGAATGTTCACCTTGTTGCTCATTCCCATGACGATGTTGGTTGGCTCAAAACCGTTGACCAATACTATGTTGGGTCCAACAGTAGTATTCAAgGGGCATGTGTGGAGAATGTACTGGACTCGGTGGTTATGTCCCTGCTGCGTAACCAAAACAGAAAGTTTGTGTTCGCTGAGATGGCGTTTTTCCATAGATGGTGGGTGGAACAAAGTCCAGAAACACAGGCGCAAGTGAGAAAGCTAGTGGATGCTGGCCAGCTAGAATTTATAAATGGTGGTTGGTGCATGCATGATGAAGCAGCCACCCACTACATAGACATGATTGATCAAACCACTCTTGGTCACCGTTTCATCAAAAACCAATTCAACAAGGTCCCTCGTGCAGGGTGGCAGATTGATCCCTTTGGACACTCTGCTGTTCAAGCTTACTTGCTCGGTGCTGAGCTTGGCTTTGACTCTCTGCACTTTGCTAGGATTGATTATCAGGACAGAGCTAAGCGCAAAGTTGATAAAACTCTTGAAGTTGTGTGGCGTGGCTCCAAGACATTTGGCTCTTCAGCTCAGATTTTTGCCAACACTTTTCCTATTCATTATAGTCCGCCAAGAGGTTTTCATTTTGAAGTCAATGATGACTTTGTTCCCGTACAGGATGATCCCCTTCTATTTGATTACAATGCTGAACAGCGAGTCAAGGACTTCATTGTTGCTGCTATTACACAAGCAAATGTGACTAGGACAAACCATATCATGTGGACAATGGGCGATGATTTCCAGTACCAATATGCAGAGACTTGGTTCAAGCAAATGGATAAACTAATTCACTATGTTAATAAGGATGGCAGAGTGAATGCTTTATATTCTACTCCATCTATTTACACCGATGCAAAAAATGATGCAAATCAACAATGGCCACTTAAAACTGATGATTACTTCCCGTATGCGGATGGACCAAATGCTTATTGGACAGGCTATTTCACTAGTCGCCCAGCCTTTAAGCGATATGTTAGGATCCTAAGTGGATACTATTTGGCAGCACGTCAACTTGAATTCTTTGCGGGAAAGAAATCCACTGTAGGCCACACTTTAGACCTTGGAGATGCTCTCGGCATTGCACAACATCATGATGCTGTCTCTGGCACTGCCAAGCAACACACAACTGACGACTATGCAAAACGACTTGCTATTGGAGCCTTAAGGgcTGAAGCTGTTGTTAGTTCTTCTTTGTATTGTCTGACTAGCAAGAAATTAGGGGTTCAATGCTCAGCACCTGCATCCGCATTTTCCCagTGTCAATTACTCAATATCAGTTACTGCCCACCAACAGAAGATAGTATTCCACAAGGGAAAAGTCTGGTATTAGTAGTGTATAACCCACTTGGATGGAATCGTACTGACCTTGTCAGAATACCAGTTAATGACGCTAATCTTGTTGTCAAAGATTCACTGGGCAATAACGTTCAAACACAATATGTAGAAGTGGATAATGTTACAGCAAATTTAAGAGAATTCTACGTCAAAGCCTATGTGGGGTTGTCACCAAAACAAGCCCCAAAGTACtggcttctatttcaggtttcGGTGCCTCCACTTGGATGGAGTacgtatttattttctaaaacagcTAAAAAAGgCAAAAGCAGAAATGGATTTCTCTCACACCTCAACAGTCAGAAAAACGATATCATTGAAGTAGGACCGGGAAATTTAAAGCTGTCATTTTCTTCAGAGACAGGACAACTCATTCGGATGCATAATTCCAGAATTGGAGTAAATGTACCAATTCAGCAAAACTATCTATGGTATAGTTCTAGTGAAGGCAAAGGTCAGGCTTCTGGTGCATATATTTTTCGGCCTAATGCCCCTCCAAATATTGTTTCAATATCAGTGCCCGTCAAGATAATCCGCGGACCATTAGTTGATGAGGTTCATCAGAAGTTTAGTTCTTGGATTTACCAGgttaCTAGGCTTTACAAAGACAAAGAGCATGCTGAGATTGAATACACTattggTCCAATGCCTATAGAGGATGGAGTTGGGAAAGAGGTGATCACGCAAATGACAACAAGTATGGTTACAAACAAAGAGTTTTATACCGATTCTAATGGAAGAGATTTTATGAAACGGGTTCGAGATCATAGGGATGATTGGCCTCTTCAAGTTAATGAACCAGTAGCAGGCAACTATTATCCACTCAATCTTGGAATTTATATTAAGGATAAGAAATCTGAATTATCAATCTTAGTTGATCGAGCCACTGGAGGAGGTAGTATCAAAGATGGTCAAGTGGAACTTATGCTTCATAGGCGCATACTCTTTGATGATAGCAGAGGAGTAGACGAAGCTCTTGATGAACAAGTGTGCCAAAATGATAAATGTCAAGGACTTACAGTAAGAGGAAATTATTATGTGGGCATCCACAACCTCAGAGCTGGTTCACGCTGGCGTCGTACAACTGGTCAGGAAGTTTATTCACCACTATTATTGGCCTTTGCACATGAGAACTTGGGAAATTGGAAGGCCTTTCATGTGACCAAAGGAACTGTCATTGACCCCAATTACAGCTTACCTCCAAATGTTGCTTTGATAACTCTTGAGGAGTTGGATAATGGCATGGTGCTTCTTCGTCTGGCACATCTATATGAGCCTGGTGAAGATGCTCAGCTTTCAACTTTGGCCAAAGttgaattgaagaaaatgttTGTCACAAAAACGATAAGGGAGTTGATAGAGGTCAGTTTATCAGCTAACCAAGAGAAGtcaaaaatgaagaagaaaacatGGAACGTCGCAGGGGACAAGGGGCAAGAATCTAAAGTAGTTAGGGGTGGCCCTGTCAGCAATGTCAATCTTGTTGTTGAGCTTGGTCCCATGGAAATACGTACTTTCCTATTGAAATTCTAA 3015 0.4096 MAKRVTIVSECFSAFLLLYLCGTVVSVKYNTGASVVPGKLNVHLVAHSHDDVGWLKTVDQYYVGSNSSIQGACVENVLDSVVMSLLRNQNRKFVFAEMAFFHRWWVEQSPETQAQVRKLVDAGQLEFINGGWCMHDEAATHYIDMIDQTTLGHRFIKNQFNKVPRAGWQIDPFGHSAVQAYLLGAELGFDSLHFARIDYQDRAKRKVDKTLEVVWRGSKTFGSSAQIFANTFPIHYSPPRGFHFEVNDDFVPVQDDPLLFDYNAEQRVKDFIVAAITQANVTRTNHIMWTMGDDFQYQYAETWFKQMDKLIHYVNKDGRVNALYSTPSIYTDAKNDANQQWPLKTDDYFPYADGPNAYWTGYFTSRPAFKRYVRILSGYYLAARQLEFFAGKKSTVGHTLDLGDALGIAQHHDAVSGTAKQHTTDDYAKRLAIGALRAEAVVSSSLYCLTSKKLGVQCSAPASAFSQCQLLNISYCPPTEDSIPQGKSLVLVVYNPLGWNRTDLVRIPVNDANLVVKDSLGNNVQTQYVEVDNVTANLREFYVKAYVGLSPKQAPKYWLLFQVSVPPLGWSTYLFSKTAKKGKSRNGFLSHLNSQKNDIIEVGPGNLKLSFSSETGQLIRMHNSRIGVNVPIQQNYLWYSSSEGKGQASGAYIFRPNAPPNIVSISVPVKIIRGPLVDEVHQKFSSWIYQVTRLYKDKEHAEIEYTIGPMPIEDGVGKEVITQMTTSMVTNKEFYTDSNGRDFMKRVRDHRDDWPLQVNEPVAGNYYPLNLGIYIKDKKSELSILVDRATGGGSIKDGQVELMLHRRILFDDSRGVDEALDEQVCQNDKCQGLTVRGNYYVGIHNLRAGSRWRRTTGQEVYSPLLLAFAHENLGNWKAFHVTKGTVIDPNYSLPPNVALITLEELDNGMVLLRLAHLYEPGEDAQLSTLAKVELKKMFVTKTIRELIEVSLSANQEKSKMKKKTWNVAGDKGQESKVVRGGPVSNVNLVVELGPMEIRTFLLKF 1004
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2245 1004 Gene3D - 467 578 IPR013780 -
Ssu2g2245 1004 Pfam Alpha mannosidase middle domain 357 448 IPR015341 GO:0004559|GO:0006013
Ssu2g2245 1004 Pfam Glycosyl hydrolases family 38 C-terminal domain 604 814 IPR011682 GO:0004559|GO:0006013
Ssu2g2245 1004 Gene3D Glycoside hydrolase family 38, central domain 321 398 IPR037094 GO:0004559|GO:0006013
Ssu2g2245 1004 Pfam Glycosyl hydrolases family 38 N-terminal domain 41 352 IPR000602 GO:0004559|GO:0006013
Ssu2g2245 1004 SUPERFAMILY Glycoside hydrolase/deacetylase 29 355 IPR011330 GO:0005975
Ssu2g2245 1004 PANTHER ALPHA-MANNOSIDASE 10 1004 - -
Ssu2g2245 1004 Gene3D Glycoside hydrolase family 38, central domain 399 454 IPR037094 GO:0004559|GO:0006013
Ssu2g2245 1004 SUPERFAMILY Galactose mutarotase-like 464 1004 IPR011013 GO:0003824|GO:0005975|GO:0030246
Ssu2g2245 1004 SMART Alpha_mann_mid_2 357 431 IPR015341 GO:0004559|GO:0006013
Ssu2g2245 1004 Gene3D Glycoside hydrolase 38, N terminal domain 40 320 IPR027291 -
Ssu2g2245 1004 CDD GH38N_AMII_LAM_like 40 316 - -
Ssu2g2245 1004 SUPERFAMILY Families 57/38 glycoside transferase middle domain 356 452 IPR028995 -
Ssu2g2245 1004 Pfam Glycosyl hydrolases family 38 C-terminal beta sandwich domain 896 1001 IPR041147 -
Ssu2g2245 1004 Gene3D - 886 1004 - -
Ssu2g2245 1004 Gene3D - 600 862 - -
Ssu2g2245 1004 PANTHER ALPHA-MANNOSIDASE 10 1004 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2245 Ssu-Chr2 78993231 79002389 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g2245 10 959 Glycoside Hydrolase AT3G26720 60.270 0.0 1201
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2245 K01191 - gmx:100806041 1878.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2245 2 78993231 79002389 Ssu2g2245 2 78993231 79002389 ECH