Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2232 atgatgTTAGACGGAACCGAAGATGAAGAGAAGTTTCTGGCCGCCGGAATCGCCGGCCTTCAGCAGAATTCGTTCTACATGCACCGTGCATTGGACTCGAACAATCTCAGGGATGCTTTGAAGTATTCGGCTCAAATGCTCTCCGAGCTCAGGACTTCCAAGCTTTCTCCTCACAAGTACTACGAACTATACATGCGCGCCTTTGATCAGTTGAGGAAGCTGGAGATGTTCTTCGAGGAAGAGACTCGTCGCGGTTGCTCCATTATTGATCTCTATGAACTCGTCCAGCATGCCGGCAACATTTTGCCTCGATTGTATCTCCTCTGTACAGTAGGATCAgtatacatcaaatccaaggaAGCTCCTGCAAAGGATGTTCTTAAGGATCTTGTGGAGATGTGTCGTGGCATTCAGCACCCTGTCCGTGGACTCTTTCTCAGAAGTTACCTTTCTCAAGTTAGTAGGGATAAATTGCCAGATATTGGTTCAGAGTACGAAGGGGATGCGGATACTGTAGCAGATGCTGTAGAGTTTGTACTACAAAATTTCACTGAAATGAACAAACTTTGGGTGCGGATGCAACATCAGGGGCCTGCCCGGGAGAAGGAGAaacgggaaaaggaaaggagcgAGTTGCGCGATCTTGTTGGGAAGAATCTTCATGTTCTCAGTCAGATAGAGGGTGTTGACCTGGATATGTACAAAGATGTTGTGCTTCCCAGAGTACTGGAGCAGGTTGTGAATTGCAAAGATGATTTGGCTCAGTTCTACTTGATGGATTGCATAATTCAAGTCTTCCCTGATGAGTATCACTTGCAAACTCTTGATGTGTTGTTGGGTGCTTACCCTCAACTTCAGCCATCCGTTGACATCAAGACAGTACTGTCCCAGTTAATGGAAAGGCTTTCAAATTATGCTGCTTCAAGTGCAGAGGTTTTGCCAGAGTTTTTGCAAGTGGAAGCATTTTCCAAATTAAGCAATGCCATTGGCAAgGTGATAGAGGCACAGCCTGACATGCCCACTGTTGGAGTTGTAACTTTATATTCATCCCTTCTCACCTTCACTCTTCATGTCCACCCTGATCGACTTGATTATGTGGATCAAGTCTTGGGAGCATGTGTGAAAAAACTCTCTGGCAAAGGGAAAATTGAGGACAAGAAGGCAACTAAGCAGATTGTTGCTCTATTAAGTGCTCCactagaaaaatataatgatattatgaCTGCATTGAAGCTTTCAAATTATCCTTGCGTAATGGAATACCTTGATATTCCAACTACAAAGATCATGGCAACTGTTATTATTCAAAGCATTATGAAAAACGGAACACGCATTTCTACTTCAGAAAAGGTTGAAGCATTGTTTGAACTTTTAAAGGGGCTTATCAAGGATTCTGATGGGATTCCTAATGACGAGCTGGATGAAGATGATTTCAAAGAGGAGCAGAATTCTGTTGCCCGTCTAATCCAGATGCTTTATAATGATGATCCAGAAGAAATGTTTAAGATCATAGATACTGTGAGGAAGCACATACTGATTGGAGGACCAAAACGTCTACCTTTTACTGTTCCAcctcttgttttttcttctttaaagTTGGTCAGACAGTTGCAAGGTCAAGGAGAAAATCCTTTTGGAGATGATGCATCAACAAcaccaaagaaaatttttcagcTTTTAAATCAGACCATCGAGACCTTGTCAGGTGTCCTGGCGCCAGAATTAGCATTGCAGTTGTACTTGCAATGTGCTGAGGCTGCAAATGACTGTGATTTGGAACCTGTTGCTTATGAATTTTTCACCCAAGCTTATATTCTATATGAAGAAGAAATTTCTGATTCCAGAGCTCAGATCACAGCTATCCATTTAATAATAGGAACTCTTCAAAGGATGCATGTCTTTGGTGTTGAAAACAGGGATACTTTAACTCACAAGGCCACAGGGTATTCAGCAAAGCTTTTAAAGAAGCCAGATCAGTGCAGAGCTGTGTATGCATGCTCACATCTGTTTTGGGTTGATGATCATGATAACATGAAAGATGGAGAGAGGGTCCTATTATGTCTCAAGCGGGCTTTAAGAATTGCAAATGCTGCCCAACAAATGGCAAATGCAGCACGAGGTAGCACTGGATCAGTAATGCTCTTCATTGAGATATTAAACAAGTATCTTTACTTCTTTGAGAAAGGAAACCTACAAGTCACCGTTGCTGCTATCCAGGGCTTAATTGAGCTAATTATGAATGAAATGCAGAGTGACACCACAACTCCAGATCCAGCTGCCGATGCTTTCTTAGCCAGTACTATGCGGTATATTGAGTTCCAGAAGCAGAAAGGCGGTACAGTAGGTGAGAAGTATGAAGCCATCAAGGTTTCGCATGCTGGATAA 2385 0.4096 MMLDGTEDEEKFLAAGIAGLQQNSFYMHRALDSNNLRDALKYSAQMLSELRTSKLSPHKYYELYMRAFDQLRKLEMFFEEETRRGCSIIDLYELVQHAGNILPRLYLLCTVGSVYIKSKEAPAKDVLKDLVEMCRGIQHPVRGLFLRSYLSQVSRDKLPDIGSEYEGDADTVADAVEFVLQNFTEMNKLWVRMQHQGPAREKEKREKERSELRDLVGKNLHVLSQIEGVDLDMYKDVVLPRVLEQVVNCKDDLAQFYLMDCIIQVFPDEYHLQTLDVLLGAYPQLQPSVDIKTVLSQLMERLSNYAASSAEVLPEFLQVEAFSKLSNAIGKVIEAQPDMPTVGVVTLYSSLLTFTLHVHPDRLDYVDQVLGACVKKLSGKGKIEDKKATKQIVALLSAPLEKYNDIMTALKLSNYPCVMEYLDIPTTKIMATVIIQSIMKNGTRISTSEKVEALFELLKGLIKDSDGIPNDELDEDDFKEEQNSVARLIQMLYNDDPEEMFKIIDTVRKHILIGGPKRLPFTVPPLVFSSLKLVRQLQGQGENPFGDDASTTPKKIFQLLNQTIETLSGVLAPELALQLYLQCAEAANDCDLEPVAYEFFTQAYILYEEEISDSRAQITAIHLIIGTLQRMHVFGVENRDTLTHKATGYSAKLLKKPDQCRAVYACSHLFWVDDHDNMKDGERVLLCLKRALRIANAAQQMANAARGSTGSVMLFIEILNKYLYFFEKGNLQVTVAAIQGLIELIMNEMQSDTTTPDPAADAFLASTMRYIEFQKQKGGTVGEKYEAIKVSHAG 794
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2232 794 SUPERFAMILY ARM repeat 95 544 IPR016024 -
Ssu2g2232 794 Pfam Vacuolar protein sorting-associated protein 35 13 747 IPR005378 GO:0015031|GO:0030906|GO:0042147
Ssu2g2232 794 PANTHER VACUOLAR SORTING PROTEIN 35 2 790 IPR005378 GO:0015031|GO:0030906|GO:0042147
Ssu2g2232 794 PANTHER VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 35A 2 790 - -
Ssu2g2232 794 SUPERFAMILY ARM repeat 462 748 IPR016024 -
Ssu2g2232 794 Gene3D - 466 775 IPR042491 -
Ssu2g2232 794 PIRSF Retromer_Vps35 2 793 IPR005378 GO:0015031|GO:0030906|GO:0042147
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2232 Ssu-Chr2 78757261 78768072 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2232 K18468 - gmx:100811902 1514.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2232 2 78757261 78768072 Ssu2g2232 2 78757261 78768072 ECH