Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2175 ATGGCGGTTCCTCTGAGAATTGACCACAACAAGCGTGGGGTGCTTGCTCGTTTGAAGACTCTCGTCAACTCTCAGAGCTTCCACTCCCGTGCGCCCAAACGACCACTGCAAGATCGACCCTCTCCAGAAAAAGAGTTGGATTACACTGTTTGCCGAGGCCGCATTGATGTCTCAAAATGGAAGACTTTGGATGCAGAGGAGCTTGGTCTAACTAGTTCTATGATTTCATACCCATCTCGGTTTGTCCTGAAACTTCTTCGGAGCAAAGGATTTGAGTCCTACTTAGTAGGTGGATGTGTGAGAGATCTACTACTGAATAGAACTCCAAAAGATTTTGATGTTATCACCACAGCAAAGCTTATGGAGGTGAGAAAGCAGTTTCGTCGTTCAGCTCATGCCAAAGTTGTTGGACGTCGTTTTCCAGTATGCTTGGTTCATATAAAAGGTTCTGTGGTTGAGGTAACTAGTTTTGAGACAGTGGCACAAACTTCCAATGGGAAGGAACAATTTTTATACTCTCTGTTGCCCAAATGCAGTAATAAGAAAGACTTATTTCGCTGCAAAAATTCCTTTCGCAGGGACTTCACAATTAATAGTTTATTTTATGACCCCTTTGCCAATAAAATCTACGATTATACTAATGGAATGGCTGATTTGAGGTCCTTAAAGCTAGAAACTGTTATCCCTGCTCAGCTGTCCTTTAAAGAGGATCCTGGAAGAATTTTGCGTGGCTTCAGAATTGCAGCTCGGCTTGGTTTATCATTATCAAGGGAGACTGAGGCTGCAATCTGGACATATTCTTCACTAGTCAAGAGCTTGGACAAGaataaaattatgattgaattgaaCTATATGCTATCTTATGGAGCTGCTGAACCATCTCTGCGTCTACTTTGGAAATTCAAATTGCTTGAATTTTTACTTCCTGTACATGCAGCATATCTTGATGAACAAGCTATTAAAGAAGATGCTCAGGCTTCCAATATGTTGATGAAATTATTCTTCCATCTGGATAATTTGGTTGCATGCGATCGACCTTGTGATTGTACTCTATGGATTGGATTGCTAGCATTTCACCTGGCATTAGTAAATGATCCTCAGGATGCTCTAGTGGTGTGGGCATTTGCTTCTGTTCTATATCATGGGGAGTGGGAAGAAGGTGTTAAATTTGCCAAAGAACCTGCAAAAATGAGTGTTAATTTTGCAGCTGAAATAAGGACGTCCAGTATATGCAAATCAGATGAAGAAATTGCAAAAGCAGTCACTAAATTGGCATCTTTGGTTATGCACTCCATACCTGCTCTGGTTGAGAGCAATAGTCTTCTTCAGTTTATGTCTAGATACCCATCTTTTCTGCAATCTGGCATGGTATTTGTTCCCAGGAAAGCAGGGAAAGTTGCTTCTGCGATTTTTAAAATGCTGGCCAgtgatgttaaattttataagagtgaaagaagaaaaaattcaaagataaaTTATGGCATGCTTGGGAAGGGGAACCTTTCAGAGATTGGATTTGTTTTGGGCAAAATTGTTCTTGAAACTATGAGTAGTGGAATTGTTGGGGATGAGGAGGATTCTGAAGGTGGACAATGTCACCTTATGACCGAGGGCACTGAAGAAATTGATCAATCGCAACTTCCAGGTCTCATAAACCATCAATTGGCAGCGATGAATGATGAAGGACAAATTCTATCAATACCAAATCCAGAATGTAGGCAAGGGAAAAACAAGAAACAGAAATTGGTTAAGAATAGATGTATTGCAGGGGAGAAAATGGGCTCAGGGAACCATGAATTGTTTGAGAAATTTGAATACAAGCAAAATAATGAAGAGCACCAGAAGCTGGTTAAGTTAAGCCAGAAGTTTGATCTGTCTATGATGAAGGACTCTTCTccgaaaaagaaaaattgtcacaGAAAACGGCTGATAAATGATAGGAAGAAAATCACCAGTGCCAATAAAAGTTCTTTAGACCAAGCTAGGAATATGAAGACGGATGAACACAGCACATATACGCCATCACAATCTACAGTATCTGAGAATCATCAGGTGATAGCTAACAACTACAACATAAACGTGGATGCAAAAACAACAAATGAGTCAGACTTGAAGAAAAAATTGCATTCATCACTTGTTGAAATCTTTAAAGTGAAAGAAAGACAGAAACCACATAAAAACAAGCGAAGTAAGCCTCCACTCACAGTCTCATCAAGTGATGAATAA 2226 0.3886 MAVPLRIDHNKRGVLARLKTLVNSQSFHSRAPKRPLQDRPSPEKELDYTVCRGRIDVSKWKTLDAEELGLTSSMISYPSRFVLKLLRSKGFESYLVGGCVRDLLLNRTPKDFDVITTAKLMEVRKQFRRSAHAKVVGRRFPVCLVHIKGSVVEVTSFETVAQTSNGKEQFLYSLLPKCSNKKDLFRCKNSFRRDFTINSLFYDPFANKIYDYTNGMADLRSLKLETVIPAQLSFKEDPGRILRGFRIAARLGLSLSRETEAAIWTYSSLVKSLDKNKIMIELNYMLSYGAAEPSLRLLWKFKLLEFLLPVHAAYLDEQAIKEDAQASNMLMKLFFHLDNLVACDRPCDCTLWIGLLAFHLALVNDPQDALVVWAFASVLYHGEWEEGVKFAKEPAKMSVNFAAEIRTSSICKSDEEIAKAVTKLASLVMHSIPALVESNSLLQFMSRYPSFLQSGMVFVPRKAGKVASAIFKMLASDVKFYKSERRKNSKINYGMLGKGNLSEIGFVLGKIVLETMSSGIVGDEEDSEGGQCHLMTEGTEEIDQSQLPGLINHQLAAMNDEGQILSIPNPECRQGKNKKQKLVKNRCIAGEKMGSGNHELFEKFEYKQNNEEHQKLVKLSQKFDLSMMKDSSPKKKNCHRKRLINDRKKITSANKSSLDQARNMKTDEHSTYTPSQSTVSENHQVIANNYNINVDAKTTNESDLKKKLHSSLVEIFKVKERQKPHKNKRSKPPLTVSSSDE 741
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2175 741 MobiDBLite consensus disorder prediction 646 681 - -
Ssu2g2175 741 MobiDBLite consensus disorder prediction 716 741 - -
Ssu2g2175 741 Gene3D Beta Polymerase, domain 2 78 225 IPR043519 -
Ssu2g2175 741 SUPERFAMILY Nucleotidyltransferase 70 220 IPR043519 -
Ssu2g2175 741 Gene3D - 226 465 - -
Ssu2g2175 741 MobiDBLite consensus disorder prediction 667 681 - -
Ssu2g2175 741 PANTHER POLYNUCLEOTIDE ADENYLYLTRANSFERASE FAMILY PROTEIN 9 716 - -
Ssu2g2175 741 CDD NT_ClassII-CCAase 80 220 IPR002646 GO:0003723|GO:0006396|GO:0016779
Ssu2g2175 741 Pfam Probable RNA and SrmB- binding site of polymerase A 252 314 IPR032828 -
Ssu2g2175 741 PANTHER POLYNUCLEOTIDE ADENYLYLTRANSFERASE FAMILY PROTEIN 9 716 - -
Ssu2g2175 741 Pfam Poly A polymerase head domain 94 223 IPR002646 GO:0003723|GO:0006396|GO:0016779
Ssu2g2175 741 SUPERFAMILY Poly A polymerase C-terminal region-like 224 367 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2175 Ssu-Chr2 77795595 77804181 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2175 - - ccaj:109801320 1242.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2175 2 77795595 77804181 Ssu2g2175 2 77795595 77804181 ECH