Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2174 ATGGGAGGTGACGCTGCCGCCGAGAGTGCCACGCCGGAACCGAACGCCGCCGCCGCCGCTGACGGTGTCAACATCAACATTCGCTGCTCCAATGGTTCCAAGTTTTCTGTTCAGATTAGCCTCGATTCCAACGTCAGATCCTTCAAGGACGTCGTCGCTCGCAACTGCGACATCTCCGCCGATCAACAGCGCCTGATTTACAAGGGTCGGATTCTCAAGGACGATCAAACCCTCCAAACCTACGGTTTGGAGGCAGATCACACTGTCCATTTGGTTCGTGGCTTTGCTCCTTCCAACACCACTGGTGGGACTAATAGTGGTGGTGCCAATACCACAACTGCTAACACGAGAGGTGTTGGTGCTAATGAGGGTGGGGGTTTAGGAGGGCCAGGAGTTGGAGCTTCACTGTTTCCCGGTCTTGGTAACAATGGGATGGGGGGTGGTGGCCTCAATGGCTTGTTTGGAGCAGGCTTTCCAGATCTTGAACAAATGCAGCAACCATTTTTGTCAAATCCCAATTTAGTGAGAGATATAATGAACACACCTGCTATgcagaatttaataaataatccggAGATAGTGCGGAATCTTATAATGAATAACCCGCAGATGCAAGAGCTCATGGATAGAAACCCTGAGCTGGCACACATACTTAATGATCCCAGCACTCTTCGGCAGACACTTGAAGCGACAAGGAACCCTGAGATCATGCGTGAAATGATGAGGAATACAGACAGAGCAATGAGCAACATTGAATCTTCTCCTGAGGGATTCAACATGCTGAGGCGCATGTATGAAAATGTTCAAGAACCATTTTTAAATGCCACTACAATGGCTGGTAATACAGGAAATGATGGTGCAGCAGTCAGGAACCAATCAACTAATCCCTCGACTACTAATTCTGAAGCAACTTCCCCGGTACCCAATACTAACCCGCTTCCTAATCCTTGGTCCTCTACTGGAACTGGAGGTACCCAAAATAACACCAGAAGGTCAACTACTGGTGGGGATGCTCGACAGCAGACACCCTCTGGCTTAGGAGGACTTGGACTGCCAGATCTTGAAGGCATGTTGGGTGGGATGCCGGATGCTGCTATGCTGACCCAGTTAATGCAAAATCCAGCTATTTCGCAAATGATGCAAAGTATCCTTTCCAATCCGCAAACTATGAATCAGatTCTTGGTGTCAATACTGAGCAGCGTGGCGTGCCTGATTTAAATTCTCTAAGGGAGGTGATGCAAAACCCAGAGTTTCTTCGTCTGTTTTCCTCGCCTGAGACACTGCAGCAACTCTTGTCTTTCCAGCAAGCTCTCCTGTCACAGCTTGGTCAGCAACAATCAACACAGGAACCAGGGCAAACGGGTGGAGGCACTGGACCATTGAACAACTTGGGGCTGGAGATGTTATCAAACATGTTTGGTGGACTTGGAGCTGGTAGCTTGGCTGTTCCTAACAGATCAAATGAGCCACCAGAGCAATTGTATGCCACCCAACTTTCTCAGCTTCAAGAGATGGGGTTCTTTGACACACAAGAGAACATAAGGGCTCTTATTGCTACATCAGGGAACGTTCATGCTGCAGTTGAGCGGCTTTTGGGGAACTCCGGACAGTAG 1614 0.4845 MGGDAAAESATPEPNAAAAADGVNINIRCSNGSKFSVQISLDSNVRSFKDVVARNCDISADQQRLIYKGRILKDDQTLQTYGLEADHTVHLVRGFAPSNTTGGTNSGGANTTTANTRGVGANEGGGLGGPGVGASLFPGLGNNGMGGGGLNGLFGAGFPDLEQMQQPFLSNPNLVRDIMNTPAMQNLINNPEIVRNLIMNNPQMQELMDRNPELAHILNDPSTLRQTLEATRNPEIMREMMRNTDRAMSNIESSPEGFNMLRRMYENVQEPFLNATTMAGNTGNDGAAVRNQSTNPSTTNSEATSPVPNTNPLPNPWSSTGTGGTQNNTRRSTTGGDARQQTPSGLGGLGLPDLEGMLGGMPDAAMLTQLMQNPAISQMMQSILSNPQTMNQILGVNTEQRGVPDLNSLREVMQNPEFLRLFSSPETLQQLLSFQQALLSQLGQQQSTQEPGQTGGGTGPLNNLGLEMLSNMFGGLGAGSLAVPNRSNEPPEQLYATQLSQLQEMGFFDTQENIRALIATSGNVHAAVERLLGNSGQ 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2174 537 MobiDBLite consensus disorder prediction 442 463 - -
Ssu2g2174 537 Gene3D - 196 254 - -
Ssu2g2174 537 SUPERFAMILY Ubiquitin-like 14 107 IPR029071 -
Ssu2g2174 537 SMART uba_6 495 533 IPR015940 -
Ssu2g2174 537 PANTHER UBIQUILIN 7 537 - -
Ssu2g2174 537 SMART ubq_7 23 94 IPR000626 GO:0005515
Ssu2g2174 537 SUPERFAMILY UBA-like 491 533 IPR009060 GO:0005515
Ssu2g2174 537 Pfam UBA/TS-N domain 495 531 IPR015940 -
Ssu2g2174 537 ProSiteProfiles Ubiquitin domain profile. 23 92 IPR000626 GO:0005515
Ssu2g2174 537 CDD Ubl_Dsk2p_like 23 95 - -
Ssu2g2174 537 MobiDBLite consensus disorder prediction 276 354 - -
Ssu2g2174 537 SMART CBM 147 188 IPR006636 -
Ssu2g2174 537 SMART CBM 201 240 IPR006636 -
Ssu2g2174 537 SMART CBM 351 393 IPR006636 -
Ssu2g2174 537 SMART CBM 396 431 IPR006636 -
Ssu2g2174 537 Pfam Ubiquitin family 25 92 IPR000626 GO:0005515
Ssu2g2174 537 Gene3D - 13 107 - -
Ssu2g2174 537 MobiDBLite consensus disorder prediction 442 460 - -
Ssu2g2174 537 MobiDBLite consensus disorder prediction 276 341 - -
Ssu2g2174 537 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 489 534 IPR015940 -
Ssu2g2174 537 CDD UBA_PLICs 495 533 - -
Ssu2g2174 537 Gene3D - 477 537 - -
Ssu2g2174 537 PANTHER UBIQUITIN DOMAIN-CONTAINING PROTEIN DSK2A-RELATED 7 537 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2174 Ssu-Chr2 77782364 77787592 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2174 K04523 - gmx:100797539 822.387
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2174 2 77782364 77787592 Ssu2g2174 2 77782364 77787592 ECH