Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2162 ATGATCCGGCGCGCAGCGTTTGACCCTGAAGTGGCAAGCAAAGTACGTGGTGTGATTGAACCATTTTTGCTGTCGCTGGCAAAGACTTCAAACCCCATATCGCTGAGAGAGTGCAACCAAATCCACGCAAAGCTCATAGTCTCCCAATGCATTTCACAAACCCACTTAACCAACACCCTCTTGAGTCTATACGCCAAATTTGGCCACTTTCGCTATGCCCACCTTCTGTTCGACCAAATGCCTCACAGGAACGTTGTCACCTGGACAACCTTAATTTCCGCGCATCTCCGAACTGGGTCACTTCCAAAAGCCTTTGAGATGTTCAATCGCATGCGTGCAACGAATGAGAGACCCAATGAGTACACTTTCTCTGTCCTGCTTCGAGCTTGTGCCACTCCTTCATTGTGGGATGTGGGTTTGCAGATTCATGGTCTGCTGGTTCGCTCTGGGCTTGAGAGAGACAAGTTTGCTGGGAGCTCTATTGTGTATATGTACTTTAACAGTGGAAGTGATCTCGAGGATGCATGTCGTGCTTTTCATGACTTGTTGGAGAGAGACCTTGTTGCATGGAATGTTATTATTTCTGGCTTTGCTCAAGTTGGGGATTTTAGCATGGTTCATAGGTTGTTTTCCGAGATGTGGGGGGTCCACGGATTGAAACCTGATGATAGTACCTTTGTTAGCTTACTCAAGTGCTGTTCTTCGTGGAAAGAGTTAAAGCAAATCCATGGACTCGCATCTAAGTTTGGTGCTGAAGTTGATGTTGTGGTGGGCAGTGCTCTGGTTGATTTGTATGCCAAATGTGGGGACGTAAGTTCTTGCAGGAAAATATTTGACTCCATGGAGGAGAAGGACAATTTTGTTTGGAGTTCTATCATTTCAGGCTATACCATGAATAATAGAGGGGAGGAAGCTGTGCATTTCTTCAGGGACATGTATAGACAAAGGGTGAGACCAGACCAACATGTATTATCGAGTACTTTGAAAGCTTGTGTTGACCTAGAGGACTTGAACTCAGGAGTTCAAGTGCATGGCCAAATGATAAAAGGTGGGCTTCAAAACGATTGTTTTGTAGCAAGTGTGCTGTTGAATCTCTATGCCAGTTTCGGTGGACTAGTGGATGTGGAAAAGTTGTTCAGAAGAATTGATGATAAAGATATTGTAGCATGGAACTCAATGATCATGGCTCATGCTCGGCTGGCACAGGGATCTGGTCCCTCTATGAAACTATTACAAGAAGTTTGTAGAACGACGTCTTTGCGAATTCAAGGCGCCACCCTAGTTGCTGTTTTAAAGTCTTGTGAGAATAAATCAGATTTGCCTGCAGGTAGACAAATTCATTCACTTATAGTGAAATCAAGTGTAAGTCATCATACTTTGGTTGGCAATGCATTAGTCCACATGTACTCTGAGTGTGGACAAATTGGTGATGCATTTAAAGCTTTTGCTGACATTGTCTGGAAAGATGATGGTTCTTGGAGTTCTATTATTGGAACTTATAAACAAAATGGGATGGAATCAGAAGCTTTAGAGCTATGCAAAGAGATGTTGGCTGATGGAATCACCTTTACCAGTTATAGCCTTCCACTATGTATTTCAGCTTGCTCACAACTTTCAGCTATGCAAGTGGGTAAACAACTCCATGTTTTTGCTATCAAGTCTGGTTACAACTATGATGTGTATGTTGCAAGTTCCATGATAGATATGTACGCTAAATGTGGAACCATGGAGGAGTCAGAGAAAGTTTTTGGTGAACAAGTACTGCCAAATGAAGTAATTTATAATGCCGTGATCTGTGGATATGCTCATCATGGAAAAGCACAAGAAGCCGTAGAAGTATTCAGTAAGTTAGAGAAGAATGGCTTAACCCCCAATAACGTAACTTTCTTAGCTGTGCTATCAGCTTGTAGCCATTCGGGTTATGTAGAAGATACTTTGTATTTCTTTACATTGATGCTTAACAAATACAAGATTAAGCCAGAGTCTGAGCATTATTCATGCTTAGTTGATGCCTATGGCCGGGCAGGAAGGATAGAGGAAGCTTACCAAATAGTGCAAAAGGATGGAAGTGAATCAGCATGGAGAACATTACTAAGTGCTTGTAGGAATCATAATAACACAAAAATTGGAGAAAAATCTGCAATGAAGATGATAGAATTGAATCCCAGTGATCATGCTTCGTATATTCTTCTTTCAAACATTTACCTGGGAGAAGGAAAATGGGAAGAAGCTCGTAAATGTAGGGAGAAAATGGCTAAGATTCGTGTGACGAAAGATCCAGGAAGTAGTTGGTTGATCTAA 2301 0.4211 MIRRAAFDPEVASKVRGVIEPFLLSLAKTSNPISLRECNQIHAKLIVSQCISQTHLTNTLLSLYAKFGHFRYAHLLFDQMPHRNVVTWTTLISAHLRTGSLPKAFEMFNRMRATNERPNEYTFSVLLRACATPSLWDVGLQIHGLLVRSGLERDKFAGSSIVYMYFNSGSDLEDACRAFHDLLERDLVAWNVIISGFAQVGDFSMVHRLFSEMWGVHGLKPDDSTFVSLLKCCSSWKELKQIHGLASKFGAEVDVVVGSALVDLYAKCGDVSSCRKIFDSMEEKDNFVWSSIISGYTMNNRGEEAVHFFRDMYRQRVRPDQHVLSSTLKACVDLEDLNSGVQVHGQMIKGGLQNDCFVASVLLNLYASFGGLVDVEKLFRRIDDKDIVAWNSMIMAHARLAQGSGPSMKLLQEVCRTTSLRIQGATLVAVLKSCENKSDLPAGRQIHSLIVKSSVSHHTLVGNALVHMYSECGQIGDAFKAFADIVWKDDGSWSSIIGTYKQNGMESEALELCKEMLADGITFTSYSLPLCISACSQLSAMQVGKQLHVFAIKSGYNYDVYVASSMIDMYAKCGTMEESEKVFGEQVLPNEVIYNAVICGYAHHGKAQEAVEVFSKLEKNGLTPNNVTFLAVLSACSHSGYVEDTLYFFTLMLNKYKIKPESEHYSCLVDAYGRAGRIEEAYQIVQKDGSESAWRTLLSACRNHNNTKIGEKSAMKMIELNPSDHASYILLSNIYLGEGKWEEARKCREKMAKIRVTKDPGSSWLI 766
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2162 766 Pfam PPR repeat family 186 233 IPR002885 -
Ssu2g2162 766 Pfam PPR repeat family 83 131 IPR002885 -
Ssu2g2162 766 Pfam PPR repeat family 589 637 IPR002885 -
Ssu2g2162 766 Gene3D Tetratricopeptide repeat domain 584 765 IPR011990 GO:0005515
Ssu2g2162 766 PANTHER - 408 765 - -
Ssu2g2162 766 Gene3D Tetratricopeptide repeat domain 136 239 IPR011990 GO:0005515
Ssu2g2162 766 Gene3D Tetratricopeptide repeat domain 240 337 IPR011990 GO:0005515
Ssu2g2162 766 Gene3D Tetratricopeptide repeat domain 34 135 IPR011990 GO:0005515
Ssu2g2162 766 Gene3D Tetratricopeptide repeat domain 403 549 IPR011990 GO:0005515
Ssu2g2162 766 PANTHER - 237 521 - -
Ssu2g2162 766 Pfam E motif 704 765 IPR046848 -
Ssu2g2162 766 SUPERFAMILY TPR-like 603 755 IPR011990 GO:0005515
Ssu2g2162 766 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 84 118 IPR002885 -
Ssu2g2162 766 PANTHER - 237 521 - -
Ssu2g2162 766 Pfam PPR repeat 259 284 IPR002885 -
Ssu2g2162 766 Pfam PPR repeat 564 585 IPR002885 -
Ssu2g2162 766 Pfam PPR repeat 664 686 IPR002885 -
Ssu2g2162 766 Pfam PPR repeat 288 314 IPR002885 -
Ssu2g2162 766 Pfam PPR repeat 492 521 IPR002885 -
Ssu2g2162 766 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 489 523 IPR002885 -
Ssu2g2162 766 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 590 624 IPR002885 -
Ssu2g2162 766 PANTHER - 34 403 - -
Ssu2g2162 766 PANTHER - 408 765 - -
Ssu2g2162 766 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 285 319 IPR002885 -
Ssu2g2162 766 PANTHER - 34 403 - -
Ssu2g2162 766 Gene3D Tetratricopeptide repeat domain 338 402 IPR011990 GO:0005515
Ssu2g2162 766 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 186 221 IPR002885 -
Ssu2g2162 766 TIGRFAM PPR: pentatricopeptide repeat domain 188 222 IPR002885 -
Ssu2g2162 766 TIGRFAM PPR: pentatricopeptide repeat domain 86 120 IPR002885 -
Ssu2g2162 766 TIGRFAM PPR: pentatricopeptide repeat domain 592 625 IPR002885 -
Ssu2g2162 766 TIGRFAM PPR: pentatricopeptide repeat domain 665 686 IPR002885 -
Ssu2g2162 766 TIGRFAM PPR: pentatricopeptide repeat domain 288 320 IPR002885 -
Ssu2g2162 766 TIGRFAM PPR: pentatricopeptide repeat domain 492 522 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2162 Ssu-Chr2 77559148 77561448 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g2162 91 765 Glycoside Hydrolase AT3G49170 30.145 1.51e-108 349
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2162 - - gmx:102667531 1379
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2162 2 77559148 77561448 Ssu2g2162 2 77559148 77561448 ECH