Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2161 ATGAGCGAACCCCAAGAGCCCTTTCCGTACCCTCCCATTGACCCGGTCAACTTCGATCTCATCATCGTCGGCACCGGCCTCTCAGAATCCGTCATCGCCGCCGCCGCCTCCGCCGTCGGCAAAACCATCCTCCACCTTGACCCCAACTCCTTCTACGGCAGCCACTTCGCCTCTCTCTCCCTCCACGACCTCACTTCCTACCTCACTTCCCCCAGCTCCGCTCCCGCCGCCGCCGCATCCACCGACTCCGACGACGTCGTTTGCGACCTCATCCGACAACCCCCGTGCTCCGACGCGGAAATCGCGTGGCTCGACGAATCCGTGTTTCTTCGTGAGAATTCGAGAAAATTCAGCGTCGATTTGGGAGGGCCGAGGGCGCTGTTCAGCGCGGACAGGACGGTCGATCTGCTGGTGAAATCAGGCGCGGCGCAGTATTTGGAGTTCAAGGGAATCGACGAGAGCTTCGTGTACGAGGCGAATGGGGGTTTGGCGAATGTGCCGGACTCTCGCGGCGCGATTTTCAGAGACAAGAAGCTCTCGCTGAGGGAGAAGAACCAGTTGATGAGGTTCTTCAAGCTCGTTCAGCAGCACTTGGATGATGCTCAGGAGGAAAAAATTTCGGACGAGGATCTGGAGATTCCGTTTGTTAGCTTCTTGGAGAAAATGAAGTTGCCGCCCAAGATTAAATCGATTCTTTTGTATGCTATAGCCATGGTAGATTATGATCAAGACAATAACGAGGCTTGTAAAGATTTACTTAAAACAAAAGATGGAATAGATTGTTTAGCTCAATACAGCTCATCTGTTGGAAgGTTTCCCAATGCTCCTGGGGCTTTGCTTTATCCTATTTATGGTGAAGGAGAACTACCGCAAGCCTTTTGTCGTCGTGCTGCTGTCAAAGGATGCATTTATGTTCTAAGAATGCCAGTTATTTCTCTTCTTATGGATAAGGTTAATGGATTATATAAAGGTGTTAGATTAGCTTCAGGCCAGGATGTATATAGCCACCAACTAATCCTGGACCCATCCTTCACAATTCCATCACCGTTATATTTGTCTCCAAGAGATTTTCCCAGGGAAAGGCTCCAAATATTGAGTCAGAGAGATATTAAAGGAATGGTGGCTAGGGGAATATGCATCACAAGGAGTTCAATAAAGCCAGATGTATCAAATTGCTCAGTGGTGTTTCCTCCAAGATCTTTGTATCCTGAACAGGTGACATCAATCAAAGCTCTTCAGATAGGATCAAATCTTGCTGTTTGTCCTGCAGGAACctttattttatacttttccaCTTTGTGCAATGATGCCGATGAAGGAAAGAAGCTACTAAAATCAGCCATGAATGCTCTTCTTACACTGCCTGTATCTGGAAACTCTGAAAGTATTCTGAGTGTTCAAAGTGATAGTGAAGATATAAAACCCATTGTGCTCTGGAGTGCATTTTATATTCAGAAATTAATTATGAGTAAATTTGAACTTATCAGCTCCACTCCTACACCGGATGGAAATCTGAACTACAATGACCTTTTAGGTGCTACTGAGAAGCTATTTGGTCAGATGTACCCCAATGAAGAATTCTTTCCAAAGGCAACGTCACCTGAAGATCCTACGGATGAGGATGATAATGGGTTAACTCTGGACAGCTAA 1650 0.4655 MSEPQEPFPYPPIDPVNFDLIIVGTGLSESVIAAAASAVGKTILHLDPNSFYGSHFASLSLHDLTSYLTSPSSAPAAAASTDSDDVVCDLIRQPPCSDAEIAWLDESVFLRENSRKFSVDLGGPRALFSADRTVDLLVKSGAAQYLEFKGIDESFVYEANGGLANVPDSRGAIFRDKKLSLREKNQLMRFFKLVQQHLDDAQEEKISDEDLEIPFVSFLEKMKLPPKIKSILLYAIAMVDYDQDNNEACKDLLKTKDGIDCLAQYSSSVGRFPNAPGALLYPIYGEGELPQAFCRRAAVKGCIYVLRMPVISLLMDKVNGLYKGVRLASGQDVYSHQLILDPSFTIPSPLYLSPRDFPRERLQILSQRDIKGMVARGICITRSSIKPDVSNCSVVFPPRSLYPEQVTSIKALQIGSNLAVCPAGTFILYFSTLCNDADEGKKLLKSAMNALLTLPVSGNSESILSVQSDSEDIKPIVLWSAFYIQKLIMSKFELISSTPTPDGNLNYNDLLGATEKLFGQMYPNEEFFPKATSPEDPTDEDDNGLTLDS 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2161 549 PRINTS Rab GDI/REP protein family signature 37 54 IPR018203 GO:0005092|GO:0007264
Ssu2g2161 549 PRINTS Rab GDI/REP protein family signature 183 198 IPR018203 GO:0005092|GO:0007264
Ssu2g2161 549 PRINTS Rab GDI/REP protein family signature 19 37 IPR018203 GO:0005092|GO:0007264
Ssu2g2161 549 PRINTS Rab GDI/REP protein family signature 133 149 IPR018203 GO:0005092|GO:0007264
Ssu2g2161 549 PRINTS Rab GDI/REP protein family signature 285 306 IPR018203 GO:0005092|GO:0007264
Ssu2g2161 549 SUPERFAMILY FAD/NAD(P)-binding domain 16 350 IPR036188 -
Ssu2g2161 549 SUPERFAMILY FAD-linked reductases, C-terminal domain 371 485 - -
Ssu2g2161 549 Gene3D Guanine Nucleotide Dissociation Inhibitor, domain 1 166 278 - -
Ssu2g2161 549 Pfam GDP dissociation inhibitor 113 451 IPR018203 GO:0005092|GO:0007264
Ssu2g2161 549 Pfam GDP dissociation inhibitor 17 70 IPR018203 GO:0005092|GO:0007264
Ssu2g2161 549 Gene3D - 15 527 IPR036188 -
Ssu2g2161 549 PIRSF Rab_ger_ger_transf_A_euk 5 94 IPR001738 GO:0005968|GO:0006886|GO:0018344
Ssu2g2161 549 PIRSF Rab_ger_ger_transf_A_euk 97 548 IPR001738 GO:0005968|GO:0006886|GO:0018344
Ssu2g2161 549 PANTHER RAB PROTEINS GERANYLGERANYLTRANSFERASE COMPONENT A 14 536 - -
Ssu2g2161 549 Gene3D Guanine Nucleotide Dissociation Inhibitor, domain 2 94 487 - -
Ssu2g2161 549 MobiDBLite consensus disorder prediction 526 549 - -
Ssu2g2161 549 PANTHER RAB GDP-DISSOCIATION INHIBITOR 14 536 IPR018203 GO:0005092|GO:0007264
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2161 Ssu-Chr2 77553054 77557797 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2161 K23460 - gmx:100795946 964.911
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2161 2 77553054 77557797 Ssu2g2161 2 77553054 77557797 ECH