Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2110 ATGTATGTCAATTGTGGAGACTTGACAGCCAGTTTCTCAATTTTGCATGAGAATTCTGCTTTGGCAGATATAGCTTCATGGAACACACTAATCGCAGGGTGTGTACAATGTGACCATTTTAGAGAGGCTCTAGAGACTTTCAAGTTGATGAGACAGGAACCTCCTTTCAACTATGACTCCATAACCCTTGTAAGTGTCTTGTCTGCCTGTGCAAAGCTGGAGTTATCCAGCCTAGGAAAGTCTCTCCACGGCCTTGCCCTTAAGTCTCCTTTGGGATCAGATACTCGGGTTCAGAACTCGTTAATTACCATGTATGACAGATGCAGGGACATCAACAGTGCCAGAGTAGTGTTTAAATTCTGCTCTATTCCCAATCTATGCTCATGGAATTGCTTGATCTCGGCTTTATCTCATAGTAGAGAAAGTAGAGAAGCACTGGTACTATTTTGCCATCTTCAGTTTAAACCAAATGAGATCACCATTGTTGGTGTTCTCTCTGTTTGTACTCAAATTGGTGTCCTAAGACATGGAAAACAAGTTCATGCCCATGTGTTCAGGACTGGTATGCAAGATAATTCTTTCATATCAGCAGCTCTAATAGATTTGTATAGCAACTGTGGAAGATTGGACACTGCCCTCCAAGTATTCAGACATTCAGAGGAGAAGTCAGAATCAGCTTGGAATTCAATGATTTCTGCATACGGATATCATGGAAATGGTGAGAAAGCAATCAAACTCTTCCATGAGATGTGTGATTCAGGAACAAGGGTGAGCAAAAGCACTTTTGTTAGCCTTTTATCTGCATGCAGCCATTCAGGACTTGTCAACCAAGGTCTTTGGTACTATGAGTGTATGTTGGAGAAATATGGAGTACAACCTGAGACTGAGCATCAAGTTTATGTGGTTGACATGCTAGGCAGATCAGGTAGACTGGATGAGGCTTACGAGTTTGCTAAGGGGCGTGACAGCTCAGGTGTATGGGGAACTCTCCTAAGTGCATGCAACTATCATGGAGAACTCAAGTTGGGGAACCAAATTGCTCAACGTCTCTTTCAACTGGAACCTCAAAATGTTGGATATTACATATCATTGTCAAATATGTATGTTGCTGCAGGAAGCTGGAAAGATGCTACCGACTTGAGACAATCTATCCAGGACCTAGGATTAAGGAAACCCGCAGGGTATAGTCTTATTGATGTTGGTATGTGA 1209 0.4235 MYVNCGDLTASFSILHENSALADIASWNTLIAGCVQCDHFREALETFKLMRQEPPFNYDSITLVSVLSACAKLELSSLGKSLHGLALKSPLGSDTRVQNSLITMYDRCRDINSARVVFKFCSIPNLCSWNCLISALSHSRESREALVLFCHLQFKPNEITIVGVLSVCTQIGVLRHGKQVHAHVFRTGMQDNSFISAALIDLYSNCGRLDTALQVFRHSEEKSESAWNSMISAYGYHGNGEKAIKLFHEMCDSGTRVSKSTFVSLLSACSHSGLVNQGLWYYECMLEKYGVQPETEHQVYVVDMLGRSGRLDEAYEFAKGRDSSGVWGTLLSACNYHGELKLGNQIAQRLFQLEPQNVGYYISLSNMYVAAGSWKDATDLRQSIQDLGLRKPAGYSLIDVGM 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2110 402 Pfam PPR repeat 128 151 IPR002885 -
Ssu2g2110 402 Pfam PPR repeat 26 52 IPR002885 -
Ssu2g2110 402 Pfam PPR repeat 198 218 IPR002885 -
Ssu2g2110 402 Gene3D Tetratricopeptide repeat domain 1 76 IPR011990 GO:0005515
Ssu2g2110 402 Gene3D Tetratricopeptide repeat domain 274 397 IPR011990 GO:0005515
Ssu2g2110 402 Gene3D Tetratricopeptide repeat domain 177 273 IPR011990 GO:0005515
Ssu2g2110 402 Gene3D Tetratricopeptide repeat domain 77 176 IPR011990 GO:0005515
Ssu2g2110 402 PANTHER OS01G0938000 PROTEIN 1 399 - -
Ssu2g2110 402 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 23 53 IPR002885 -
Ssu2g2110 402 SUPERFAMILY ARM repeat 301 380 IPR016024 -
Ssu2g2110 402 PANTHER OS07G0578800 PROTEIN-RELATED 1 399 IPR045215 GO:0003723|GO:0009451
Ssu2g2110 402 Pfam E motif 337 398 IPR046848 -
Ssu2g2110 402 Pfam PPR repeat family 225 270 IPR002885 -
Ssu2g2110 402 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 223 257 IPR002885 -
Ssu2g2110 402 TIGRFAM PPR: pentatricopeptide repeat domain 226 256 IPR002885 -
Ssu2g2110 402 TIGRFAM PPR: pentatricopeptide repeat domain 26 52 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2110 Ssu-Chr2 76640128 76641336 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g2110 1 401 Glycoside Hydrolase AT3G49170 31.643 3.73e-70 234
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2110 - - gmx:100775736 743.036
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2110 2 76640128 76641336 Ssu2g2110 2 76640128 76641336 ECH