Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2104 ATGGCGAGAGAATCCGGCGCGAACGGTCCTTCAACTCCTTCGTCTAATTCCGCGGAATCCTTCATTGGTTGCTTCATAAGCTTGATTTCCAAGTGCGAGATTCGCTACGAGGGCGTTCTCTATTTCCTTAACATTCAGGATTCCACCATCGGCTTGAAGAACGTTAGATCCTATGGAACAGAGGGGAGAAGAAAAGATGGTCCACAAGTTCCTCCAAGTGATAAGATTTATGAATACATTCTTTTCCGGGGAAATgatattaagAATTTGCAGATCAAGTCACCCTCAACATCTGCCAAACCAGAAGAGAAGATATTTAGTGATCCAGCTATTATTCAGTCGCAATATTCTGGGGTGCTAAGTTCTCCGGAGGCCTCAGTTGGTGGTAGAAGTTTGACAGAATCAATTCAAAGGCAAGATACTCCTGCTATATCCAGTAAAGCCTTTCCTGTTGGGTTGCCTTCTCATCAGTCTGTAACTCAGCTGGGCCCTTTGAATTCATCTGCTGCTACTCAGGTTGCCAGTCATCCATCTTTTTCTACAGCAATGTATTGGCAAGGACACAGTGGGACATCTAGCAATAGTTCTCATTCTCTGCTACAATCTAGTTCTCTTCAACCCCCATCGATGGCAGCATCCTTTGCTGTACAGAATCAGATGCAAAATGCAGAAACTCAGGTACCTACACAAGGGGGATGGCCAGCTTTATCAGAGTGTGGTCTACCTGTATCTTCTGTCACGGCTTCTGCTGTAAATCTGACTCCTTCACCTTCTCTTACCTCTTTAAAAATTTCTGATTCTCCTGATTTTTCATCCCTTTTGTCTACTAAGACACCTATGCCATATTCTGCATCCATGACTTTTGATGGATCAAACATGCCTCAGTTTTCTTCACCTCTCCAAGACATAAATTCTATTACTCAAATATCTGGAAATATTTGTCCTGACCCAAGGCCAATTCATCCTCGACATTCTGTCCATCATTCTGCTTCTTCTTTTGTAGATTCTACTTCAGGTCCCTTGCCAACAGCACCATCTTTGTTAACCCCAGATCAATTTGCACATCCTAGAGAACAGTTACTTTCTTTAACACATAATTTGAACCCTAATCAGAAGGATATGGATTCTCTGACTCTAACATCCTCTGGTTCCTCTGCTTTAATGCCTTCTCCAGCATCTCAGGCACCACTACTTCCACTACCAACTTTGGTGCAAAAGCCTCAATACACAGCTCCACAATTCACTGAAGAGTTTGATTTTGAGGCCATGAATGAAAAGTTCAAAAAGGATGAAGTATGGGGTTCTCTTGGAAAGGCAACCATAAAAATAGCGGGGGTGAAGGATAATGCTACTGCTTCTCTCAATTTGGGTGACAGAGAATTTCATGGGATGGTACCAAACCCTAAGTCATACAAGAAAGATGACTTTTTTGACACAATTTCTTGTAACTCTTTGACTCGTGGATCAAGGAATGGACAAAATCGTTTCTCTGAGAGAATGAAACTGGATACTGAGACATTTGGCAATTTCCAGCAGAGGCCTAATTTTAGTTACGGTGGTAATGGTGCTGGACGGGGTGAGAATTTCAGGGGCTCATATAATTGGGGAAGGGGTTATGGCTACAGTTGGAGAGGGCGTGGTCCAAACTTTCATTTCTAG 1659 0.4268 MARESGANGPSTPSSNSAESFIGCFISLISKCEIRYEGVLYFLNIQDSTIGLKNVRSYGTEGRRKDGPQVPPSDKIYEYILFRGNDIKNLQIKSPSTSAKPEEKIFSDPAIIQSQYSGVLSSPEASVGGRSLTESIQRQDTPAISSKAFPVGLPSHQSVTQLGPLNSSAATQVASHPSFSTAMYWQGHSGTSSNSSHSLLQSSSLQPPSMAASFAVQNQMQNAETQVPTQGGWPALSECGLPVSSVTASAVNLTPSPSLTSLKISDSPDFSSLLSTKTPMPYSASMTFDGSNMPQFSSPLQDINSITQISGNICPDPRPIHPRHSVHHSASSFVDSTSGPLPTAPSLLTPDQFAHPREQLLSLTHNLNPNQKDMDSLTLTSSGSSALMPSPASQAPLLPLPTLVQKPQYTAPQFTEEFDFEAMNEKFKKDEVWGSLGKATIKIAGVKDNATASLNLGDREFHGMVPNPKSYKKDDFFDTISCNSLTRGSRNGQNRFSERMKLDTETFGNFQQRPNFSYGGNGAGRGENFRGSYNWGRGYGYSWRGRGPNFHF 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2104 552 Pfam FDF domain 413 509 IPR019050 -
Ssu2g2104 552 PANTHER DECAPPING 5-LIKE PROTEIN-RELATED 16 548 - -
Ssu2g2104 552 Gene3D - 12 97 - -
Ssu2g2104 552 SMART LSM14_2 15 116 IPR025609 -
Ssu2g2104 552 ProSiteProfiles FFD box profile. 469 484 IPR025761 -
Ssu2g2104 552 ProSiteProfiles TFG box profile. 491 511 IPR025768 -
Ssu2g2104 552 SMART FDF_2 412 511 IPR019050 -
Ssu2g2104 552 CDD LSm14_N 18 92 IPR025609 -
Ssu2g2104 552 Pfam Scd6-like Sm domain 21 94 IPR025609 -
Ssu2g2104 552 ProSiteProfiles DFDF domain profile. 406 442 IPR025762 -
Ssu2g2104 552 PANTHER SCD6 PROTEIN-RELATED 16 548 - -
Ssu2g2104 552 SUPERFAMILY Sm-like ribonucleoproteins 20 95 IPR010920 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2104 Ssu-Chr2 76472863 76477992 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2104 K18749 - gmx:102669894 817.764
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2104 2 76472863 76477992 Ssu2g2104 2 76472863 76477992 ECH