Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2088 ATGGGCCAACACACAATTTCTTTTGACCCAACACAGATCCTTCGATTTGGTCTAGGTTGTGTGAAGGGTTTGGAGTGGGCTCTGATAACTGCATTCTATTCCTACCCACTGTATTTCAGTGTTGCGAGTTTGTTGTGCAGCAGAAGCACCAACAATACTCGGAGATCGTTTTCGCTGATTCTCAACTGGGTCGGAACCAAAACAAGAAACTTCGATGGCCCTAATGAAGTTTGTCTTATTTTGTTGATGTTATGCAGCTTCGTTGGGGGCATTGAGATGGGTTTGCCAAGGTTTGGGCGTCCTAGGAGTGACGGTGAATTGAGTTCGAACCTTTACGTGGCCAATTGTGGGCCAGCTGTGGGGCTTTCCGATGATGACGTTGCATCTGTGTTCTGCAAATTTGGAGAGCTGAAGGGAGTTTATGCGGCAGATGAGAGTGGGACACGTGTCATTGTGGCTTATGTTGAAGAGGGTTCTGCACAAGCTGCCTTAAAGGCGTTACATGGACGCCCCTGTCCTGAACTTGGAGGTCGATCCTTGCATATCCGTTATTCTGTGCTTCAGCCAACTCCACATGATCAAGCTAGTGATTTGGTTCCTGTATCTATCACAGCGTCAGATGTGAGCATTCCAGGCCTTTACCTAGTGCATGACTTCATTAGTGCAAAAGAGGAAGAGGAGTTGCTCCAAGCTGTTGACTGTTGGCCTTGGAACAGTCTTTCAAAAAGAAGGGTTCAACACTATGGTTATGAGTTTCGTTATGATGTGAGTTTCAAAGATTATTTGGGTTTTTCTCATTATCTACTAGGAACTGTTAATACAAGGCATTGCTTAGGTGAACTTCCGTCATTTGTTTCTCCAATACTTGAAAGAATCTCATCATGTCCAACTTTCaagaatgttaaaaatatagttttggaCCAACTTACGGTAAATGAGTACCCACCTGGAGTGGGCCTGTCCCCCCATATAGACACTCACTCTGCATTTGAAGATTTAATTTTCAGCCTTTCATTATCAGGGCCTTGTATAATGGAGTTCAGACGATATGAAAATGGTGATTGTCTTCCCAGAGTTGCCTCAAATGCTGttgcaaaaatagaaaatgcagatcattcaaattttataaggagGGCTATCTATCTTCCCCCTCAATCTTTGCTACTCTTGTCTGGAGAAGCACGTTATGCATGGCATCATTACATTCCACACCACAAGATAGACAAAGTGAATGGCAGAGTCATCAAAAGGGCTTCAAGGAGGGTATCTTTTACATTTCGTAAGGTTAGAGCAGGTTTGTGCAAATGTGAATTTCCTCAGTATTGCGATTCTCAAAGATAA 1341 0.4198 MGQHTISFDPTQILRFGLGCVKGLEWALITAFYSYPLYFSVASLLCSRSTNNTRRSFSLILNWVGTKTRNFDGPNEVCLILLMLCSFVGGIEMGLPRFGRPRSDGELSSNLYVANCGPAVGLSDDDVASVFCKFGELKGVYAADESGTRVIVAYVEEGSAQAALKALHGRPCPELGGRSLHIRYSVLQPTPHDQASDLVPVSITASDVSIPGLYLVHDFISAKEEEELLQAVDCWPWNSLSKRRVQHYGYEFRYDVSFKDYLGFSHYLLGTVNTRHCLGELPSFVSPILERISSCPTFKNVKNIVLDQLTVNEYPPGVGLSPHIDTHSAFEDLIFSLSLSGPCIMEFRRYENGDCLPRVASNAVAKIENADHSNFIRRAIYLPPQSLLLLSGEARYAWHHYIPHHKIDKVNGRVIKRASRRVSFTFRKVRAGLCKCEFPQYCDSQR 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2088 446 Gene3D - 204 434 IPR037151 -
Ssu2g2088 446 SUPERFAMILY RNA-binding domain, RBD 100 190 IPR035979 GO:0003676
Ssu2g2088 446 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 305 430 IPR005123 -
Ssu2g2088 446 PANTHER ALKYLATED DNA REPAIR PROTEIN ALKBH8 HOMOLOG 107 443 - -
Ssu2g2088 446 PANTHER UNCHARACTERIZED 107 443 - -
Ssu2g2088 446 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 109 187 IPR000504 GO:0003723
Ssu2g2088 446 SUPERFAMILY Clavaminate synthase-like 204 430 - -
Ssu2g2088 446 Pfam 2OG-Fe(II) oxygenase superfamily 212 427 IPR027450 -
Ssu2g2088 446 Gene3D - 99 199 IPR012677 -
Ssu2g2088 446 SMART rrm1_1 110 183 IPR000504 GO:0003723
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2088 K10770 - gmx:100777529 640.573
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2088 2 75971156 75975157 Ssu2g2088 2 75971156 75975157 ECH