Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2047 ATGGGTAATCCACGGAATTCAAGGACCAGCGACGACCTTCATACGGCGGCGAGGTCCGGTGATCTTATCGCCGTTCAGTCAATTTTGGCTTCAAGTCCTTTGGCCGTTAATTCCAGAGATAAGCATTCCAGAACACCTCTACATTTAGCAGCATTTTCTGGGCAAGCAGAGATAGTCACTTATCTCTGCAAGCATAAGGCTGATGTTGGTGCTTCTGCTATGGATGACATGGCTGCTATACACTTTGCTTCACAGAAGGGACATTTAGAAGTTGTTCGCGCTCTACTTTCAGCTGGGGCCTCTCTCAAAGCCTCTACCCGCAAAGGCATGACTTTATTGCACTATGCTGTTCAAGGTTCCCATCTGGAACTTGTCAAGTACTTGGCCAAAAAAGGGGCAAACCTTGGTGCCAAGACAAAGGCAGGAAAGACTCCTTTGGATCTTGCTACCAATGAAGAAATCCGCTCCTTTCTAGAGGAATTTGAAAGGTCAGCTAAGGATGGAGAAATgggaaagaaagataaagataaagctGAAGAATTTGATCCACCAAAGACATCCACATTGGGATCGGAAGGTAATTTGAGTACGGAACCTCCTGCAGCTGCTGTTgatgaagaaaacaatgaaagagagaagaggaagGGTAATGAAGATGACGCAAGAGAAGAGTCGTCACAACCAAAAAAGGCAAGAGTTAAGTTAAGCCATCTTCAAAGTTCAGATGATACCCAAGAAGAAGAGAACCTGTAG 753 0.4223 MGNPRNSRTSDDLHTAARSGDLIAVQSILASSPLAVNSRDKHSRTPLHLAAFSGQAEIVTYLCKHKADVGASAMDDMAAIHFASQKGHLEVVRALLSAGASLKASTRKGMTLLHYAVQGSHLELVKYLAKKGANLGAKTKAGKTPLDLATNEEIRSFLEEFERSAKDGEMGKKDKDKAEEFDPPKTSTLGSEGNLSTEPPAAAVDEENNEREKRKGNEDDAREESSQPKKARVKLSHLQSSDDTQEEENL 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2047 250 MobiDBLite consensus disorder prediction 204 244 - -
Ssu2g2047 250 PANTHER - 1 249 - -
Ssu2g2047 250 SUPERFAMILY Ankyrin repeat 12 156 IPR036770 -
Ssu2g2047 250 ProSiteProfiles Ankyrin repeat profile. 108 140 IPR002110 GO:0005515
Ssu2g2047 250 ProSiteProfiles Ankyrin repeat region circular profile. 42 69 - -
Ssu2g2047 250 MobiDBLite consensus disorder prediction 161 183 - -
Ssu2g2047 250 Gene3D - 6 182 IPR036770 -
Ssu2g2047 250 ProSiteProfiles Ankyrin repeat region circular profile. 75 104 - -
Ssu2g2047 250 PRINTS Ankyrin repeat signature 43 58 IPR002110 GO:0005515
Ssu2g2047 250 PRINTS Ankyrin repeat signature 91 105 IPR002110 GO:0005515
Ssu2g2047 250 ProSiteProfiles Ankyrin repeat region circular profile. 108 140 - -
Ssu2g2047 250 MobiDBLite consensus disorder prediction 161 250 - -
Ssu2g2047 250 ProSiteProfiles Ankyrin repeat profile. 42 74 IPR002110 GO:0005515
Ssu2g2047 250 Coils Coil 204 224 - -
Ssu2g2047 250 PANTHER ANKYRIN REPEAT PROTEIN 1 249 - -
Ssu2g2047 250 SMART ANK_2a 108 137 IPR002110 GO:0005515
Ssu2g2047 250 SMART ANK_2a 8 38 IPR002110 GO:0005515
Ssu2g2047 250 SMART ANK_2a 42 71 IPR002110 GO:0005515
Ssu2g2047 250 SMART ANK_2a 75 104 IPR002110 GO:0005515
Ssu2g2047 250 ProSiteProfiles Ankyrin repeat profile. 75 107 IPR002110 GO:0005515
Ssu2g2047 250 Pfam Ankyrin repeats (3 copies) 80 158 IPR002110 GO:0005515
Ssu2g2047 250 Pfam Ankyrin repeats (3 copies) 13 71 IPR002110 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g2047 11 162 Miscellaneous Gene Families AT2G31820 33.544 3.47e-14 70.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2047 - - gmx:100812821 403.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2047 2 74247550 74249273 Ssu2g2047 2 74247550 74249273 ECH