Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2012 ATGAATCGCCACCACGATCCCAATCCATTCGACGAAGAAGAAGTCAATCCCTTCTCGAAGGGTGCTGCTGCTCCTGCATCAAAATCACGTATTCCACCAATAGCATCTGAGCCACTGGGCTTTGGTCAAAGACATGATGCTACAGTTGATATTCCTTTGGATACTACAAATGACTCCAAGAAAAAAGGTCAAGAGCTAGCAGCTTGGGAAGCGGATTTAAAACGGAGAGAGAAggaaataaaaagaagagaagaggctATTTCTAGAGCTGGTGTGCCTGTTGATGATAAGAATTGGCCTCCACTTTTCCCAATCATTCACCATGATATTGCCAATGAGATACCGGTTGATGCTCAGAGGCTGCAATATTTGGCCTTTGCAAGTTGGTTAGGAATTGTTCTCTGCCTAGTTTTTAATGTAGTTGCTGTGACTGTCTGTTGGATCAGAGGCGGCGgtgttaaaatttttttccttgcGGTGATATATGCTCTACTTGGTGTTCCCCTTTCATATGTTCTTTGGTACAGGCCCCTCTATCGTGCTATGAGGACGGACAGTGCACTGAAGTTTAGTTGGTTTTTCATGTTCTACTTGCTTCATATTGCATTTTGCATCTTTGCTGCAATAGCGCCTCCAATTGTTTTTCATGGAAAATCATTAACGGGCATCCTTGCTGCAATTGATGTCTTCTCAGACCATGTATTGGTTGGGATATTCTATTTGGTTGGATTTGGCATGTTTTGCTTGGAGGCTCTTCTAAGCTTATGGGTGCTTCAGAAAATATACATGTATTTCCGGGGGCATAAGTGA 810 0.4099 MNRHHDPNPFDEEEVNPFSKGAAAPASKSRIPPIASEPLGFGQRHDATVDIPLDTTNDSKKKGQELAAWEADLKRREKEIKRREEAISRAGVPVDDKNWPPLFPIIHHDIANEIPVDAQRLQYLAFASWLGIVLCLVFNVVAVTVCWIRGGGVKIFFLAVIYALLGVPLSYVLWYRPLYRAMRTDSALKFSWFFMFYLLHIAFCIFAAIAPPIVFHGKSLTGILAAIDVFSDHVLVGIFYLVGFGMFCLEALLSLWVLQKIYMYFRGHK 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2012 269 Coils Coil 66 86 - -
Ssu2g2012 269 MobiDBLite consensus disorder prediction 1 59 - -
Ssu2g2012 269 Pfam SCAMP family 97 267 IPR007273 GO:0015031|GO:0016021
Ssu2g2012 269 PANTHER SECRETORY CARRIER-ASSOCIATED MEMBRANE PROTEIN SCAMP 1 269 IPR007273 GO:0015031|GO:0016021
Ssu2g2012 269 PANTHER SECRETORY CARRIER-ASSOCIATED MEMBRANE PROTEIN 4 1 269 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2012 Ssu-Chr2 73446512 73455820 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g2012 1 269 Miscellaneous Gene Families AT1G32050 74.908 5.28e-152 423
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2012 K19995 - gmx:100806586 506.523
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2012 2 73446512 73455820 Ssu2g2012 2 73446512 73455820 ECH