Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2002 ATGGCTGCTCTGCAATACTTGGAATCGCTGCGCAACGCGCACCCTGAGCTCGCGGATTGGTACAATTCGCTGGCGGATCTGTACCAGAAGAAGCTCTGGCACCAGCTCACGCTCAAGCTCGAGCAGTTCGTCGCTCTCGCTGTTTTCCAGGCTGGTGATgctttaatacaattatatcacaatttcaTCACAGACTTTGAGACCAAAATCAACCTTCTCAAGCTTGCACATTTTGCTGTTATAGTCTCTCGGCAGTATTCCGAGAAAGAAGCTGCTGTTGGTTATCTTGGAGGGGTCATTGAGAAACTGCAAGCCACTAGAGAGCAGCGGATAGAAGAACCTATTCTTTACATTAAGATGCAAATAGCAATATTCAAGCTTGAGCAAGGTGACCAAAAGGAATGCAAGAAACTTCTAGAAGATGGAAAGGGTACACTTGACAGCATGACAGATATTGATCCATCTGTATATGCTAGCTATTACTGGGTATCATCTCAATATCATAAGACCCGCCAAGAATTTGCTGAGTTCTACAAAAGTGCTCTTCTCTATTTGGCATACACATCAGTGGAGTCTCTCTCAGATTCATTCAAGCTGGATTTGGCATTTGATTTGTCCCTCTCTGCCCTTCTCGGGGATAATATCTACAACTTTGGAGAGCTACTTGCCCATCCTATAATTAAGAGCCTTCTGGGGACAAAGGTGGAATGGCTTTACTATATTCTGCAGGCATTCAATTCTGGTGATTTATTACGATATCAAGAATTATGTCGGGTGCATAATGCTGCTTTAAGGGCTCAACCAGCACTAGTTCAAAATGAACAGAAGTTGTTGGAAAAGATCAACATTCTCTGTCTGATGGAGATTATATTCagTCGGCCTTCGGAAGATCGAACTATTCCCTTGAGCATAATTGCAGAGCGTACAAAACTTTCTATAGAGAATGTGGAGCATCTCCTTATGAAGAGCCTATCTGTTCATCTAATTGAGGGTATAATTGATCAAGTTGAGGGCACAGTGCACGTTTCCTGGGTGCAGCCAAGAGTTCTGGGTATTCAACAGATCAAATCCTTACGGGATCGACTGGACGGTTGGACAGGAAAAGTACACGCTGCGTTGTTGTCCATCGAGGCAGAAACACCTGATCTAATTGGATcgtga 1161 0.4289 MAALQYLESLRNAHPELADWYNSLADLYQKKLWHQLTLKLEQFVALAVFQAGDALIQLYHNFITDFETKINLLKLAHFAVIVSRQYSEKEAAVGYLGGVIEKLQATREQRIEEPILYIKMQIAIFKLEQGDQKECKKLLEDGKGTLDSMTDIDPSVYASYYWVSSQYHKTRQEFAEFYKSALLYLAYTSVESLSDSFKLDLAFDLSLSALLGDNIYNFGELLAHPIIKSLLGTKVEWLYYILQAFNSGDLLRYQELCRVHNAALRAQPALVQNEQKLLEKINILCLMEIIFSRPSEDRTIPLSIIAERTKLSIENVEHLLMKSLSVHLIEGIIDQVEGTVHVSWVQPRVLGIQQIKSLRDRLDGWTGKVHAALLSIEAETPDLIGS 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2002 386 ProSiteProfiles PCI domain profile. 174 347 IPR000717 -
Ssu2g2002 386 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 13 HOMOLOG B-LIKE 1 384 - -
Ssu2g2002 386 SUPERFAMILY "Winged helix" DNA-binding domain 275 348 IPR036390 -
Ssu2g2002 386 Gene3D - 221 343 - -
Ssu2g2002 386 Pfam PCI domain 238 343 IPR000717 -
Ssu2g2002 386 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 272 365 - -
Ssu2g2002 386 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 13 1 384 IPR035298 -
Ssu2g2002 386 SMART PINT_4 272 365 IPR000717 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2002 K03039 - gmx:100804455 719.153
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2002 2 73312509 73317806 Ssu2g2002 2 73312509 73317806 ECH