Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1981 ATGATAATGGCCTCTAAATTCAAGCACGCATCCTCTACGGTTCGGAAGATTACACAACTGAGCAATGATATGGATCAGGAAAGTGAGAATGGGGGCGTTGGTCTTGCTACCTACACGGTGCACATTCCTCCAACGCCTGATAACCAGCCTATGGAGATTTCTCTGGAGAGGTCCAATTCTCGGAGAGTGGAGGACCAGTACGCTTCGAGTTCTATGTTCACCGGCGGTTTCAACCAGCTCACGCGCGCGCATTTGAAGGACAAGGTGATCGAGTCCGAATCCAGCCACCCCCAGATGGCCGGTGCAAAAGGGTCCTCTTGTGCGGTGCCTGGGTGCGATGGAAGGGTCATGACTGACGAGAGGGGGTTGGACGTGCTTCCTTGTGAGTGTGATTACAAGATTTGTAGGGACTGTTACAGGGATGCTTTGAGGACCGGTGAGGGGATTTGCCCCGGTTGCAAGGAGCCTTACAAGGAGCCTGAGGAGGTGCAAGGTGTGGCTAACTCACGGGCACTGCCACTGCCTCCTGGTGCTGGGGTTAACAAGATGGAGAGGAGGTTGTCGTTGATGAAATCGGGGGCGTTGACGAGGAGCCAGACTAATGAGTTTGATCATGCTCAGTGGCTGTTTGAGACCAAGGGCAGTTATGGATATGGGAATGCTATGTGGCCTAAGGATTCTGAACTTGATGCCAGTTCTGTTTCCGGTTCTGATTGGATGGGGGGTGACCCTAATGTATTCAACGAGAAGCAGTGGAGGCCCTTGACCCGGAAATTGAGTATTTCTGCTGCAGTTCTAAGTCCCTATCGGCTCATTATATTTGTTCGGCTAGTGGTTCTAGTTTTCTTCCTTGTGTGGAGGGTCAGAAACCCAAATGATGATGCACTCTGGCTGTGGGGCATGTCTGTGGTTTGTGAAATCTGGTTTGCCTTCTCCTGGGTGCTTGACCAGCTTCCTAAGCTCTTCCCCATAAATCGTTTTGCTGATCTTGATGTTTTGAAAGAGAAGTTTGAAACTCCTAATCCCACTAATCCTACTGGGAAGTCTGATCTTCCGGGAATAGATATGTTTGTGTCAACTGCAGATCCAGAAAAAGAACCACCACTTGTTACTGCAAATACTATTCTTTCTATTCTAGCTGCTGATTATCCTGTTGAGAAACTTTCATGTTATGTCTCTGACGATGGAGGTGCACTTCTAACTTTTGAGGCCATGGCAGAGGCTGCAAGTTTTGCCAATCTGTGGGTTCCTTTTTGTCGGAAGCATGGCATTGAACCCAGGAACCCAGAATCTTATTTTAATCTGAAGAGAGATCCCTACAAGAACAAAGTGCGCTCTGACTTTGTGAGGGAACGCAGGCGAGTAAAGCGTGAGTATGACGAGTTCAAGGTTCGGATTAATAGCCTTCCTGATTCAATCCGGCGGCGTTCTGATGCTTATAATGCTAGAGAAGAGATCAAAGCTATGAAGAAGTGGAGAGAGAATGGAAATGAAGAACCAGTcgagaatttgaaaattcctAAAGCTACATGGATGGCTGATGGTACTCATTGGCCTGGTACTTGGACGACTGCTGCACCGGAGCATTCCAGGGGTGATCATGCTAGTATCATACAgGTAATGTTAAAACCCCCAAGTGATGAACCACTGACTGGCACAGCAACAGATTCAGATGCATTGGATTTAACTGAAGTTGATATTCGTCTGCCTATGCTTGTCTATGTTTCTCGTGAAAAACGACCCGGCTATGATCACAACAAAAAGGCTGGAGCCATGAATGCCCTAGTTCGAGCCTCAGCTATAATGTCCAATGGCCCTTTCATACTTAATCTTGATTGTGACCATTACATATTTAACTCCCAGGCACTGAGAGAAGGGATGTGCTTCATGATGGACCGCGGTGGGGAGAGGCTTTGCTATGTTCAATTTCCTCAAAGGTTTGAAGGAATCGACCCCAATGATCGCTATGCCAATCATAACACTGTCTTCTTTGATGTCAATATGCGGGCTCTCGATGGAATTCAAGGTCCTGTATATGTTGGCACAGGATGCCTATTTCGAAGAACTGCACTCTATGGCTTTGATCCACCCCAGATGAAAGAAGAGGTCGCTGGTTGGTTTGGTCGAAAGAACAAGAAATCCTCAACAGTGGCCTCTGTCCCTGAAACTGGTTCTGAGGACCAGTCACTGAGGAATGGTGGCATTGATGACGAAGAAATGAGCATTGCTCTTATTCCCAAGAAATTTGGCAACTCAAGTCTTCTTGTTGATTCAATCAAGGTGGCTGAGTTCCAAGGGCTTCCCCTTGCTGATCATTCATCTATCAAATATGGGCGTCCACCCGGTGCTCTAACTCTCCCTCGGGATCCTCTTGATGCTGCTACGGTTGCTGAGGCCATCAATGTCATCTCATGCTGGTATGAAGATAAGACTGAATGGGGCCTTAGAGTTGGGTGGATTTATGGGTCTGTTACTGAGGATGTTGTGACAGGTTATAGAATGCACAATAGAGGATGGAAGTCTGTATATTGTGTGACCAAAAGGGATGCCTTCCGTGGCACTGCTCCAATCAATCTGACAGACCGGCTGCACCAGGTTCTTCGATGGGCAACTGGCTCAGTTGAAATCTTCTTTTCGCGCAACAATGCTCTCTTGGCTAGCTCTAGATTGAAATTTCTGCAGAGGATTGCATACCTTAATGTTGGAATTTACCCATTCACTTCCATCTTCCTTATTGTCTATTGCTTCCTTCCTGCTCTTTCACTTTTCACTGGCCAGTTCATTGTTCAGAGCCTTCAAGTCACCTTCCTAGTTTACCTCTTGGGCATAACCTTGACCCTTGTTCTCCTTGCTGCTTTGGAAATCAAGTGGTCTGGCATTGAACTTGAAGAATGGTGGAGGAATGAACAATTCTGGTTGATTGGAGGCACAAGTGCTCATCTTGCTGCTGTGCTCCAGGGTCTACTAAAGGTGATGGCTGGCATTGAGATTTCATTCACTTTGACATCAAAATCTGCCGGTGACGACGAAAATGATGAATATGCCGATCTCTATGTCATCAAGTGGACGTCTCTTATGATCCCACCAATCACAATCATGATGGTTAATTTGATAGCAATTGCTGTTGCTGTTAGCCGAACCATATACAGCGATGATCGTCAATGGAGCAGTTTGCTTGGAGGTGTGTTTTTCAGCTTTTGGGTCTTGGCTCATTTATATCCCTTTGCAAAAGGGCTAATGGGTAGAAGGGGTAGGACACCCACTATTGTGTTTGTATGGTCAGGTCTAATATCAATTACTATCTCACTCCTTTGGGTTGCTATCGACCCTCCCTCTGGCAGCAGTCAAATTGGAGGGTCATTCCAATTCCCTTGA 3375 0.4655 MIMASKFKHASSTVRKITQLSNDMDQESENGGVGLATYTVHIPPTPDNQPMEISLERSNSRRVEDQYASSSMFTGGFNQLTRAHLKDKVIESESSHPQMAGAKGSSCAVPGCDGRVMTDERGLDVLPCECDYKICRDCYRDALRTGEGICPGCKEPYKEPEEVQGVANSRALPLPPGAGVNKMERRLSLMKSGALTRSQTNEFDHAQWLFETKGSYGYGNAMWPKDSELDASSVSGSDWMGGDPNVFNEKQWRPLTRKLSISAAVLSPYRLIIFVRLVVLVFFLVWRVRNPNDDALWLWGMSVVCEIWFAFSWVLDQLPKLFPINRFADLDVLKEKFETPNPTNPTGKSDLPGIDMFVSTADPEKEPPLVTANTILSILAADYPVEKLSCYVSDDGGALLTFEAMAEAASFANLWVPFCRKHGIEPRNPESYFNLKRDPYKNKVRSDFVRERRRVKREYDEFKVRINSLPDSIRRRSDAYNAREEIKAMKKWRENGNEEPVENLKIPKATWMADGTHWPGTWTTAAPEHSRGDHASIIQVMLKPPSDEPLTGTATDSDALDLTEVDIRLPMLVYVSREKRPGYDHNKKAGAMNALVRASAIMSNGPFILNLDCDHYIFNSQALREGMCFMMDRGGERLCYVQFPQRFEGIDPNDRYANHNTVFFDVNMRALDGIQGPVYVGTGCLFRRTALYGFDPPQMKEEVAGWFGRKNKKSSTVASVPETGSEDQSLRNGGIDDEEMSIALIPKKFGNSSLLVDSIKVAEFQGLPLADHSSIKYGRPPGALTLPRDPLDAATVAEAINVISCWYEDKTEWGLRVGWIYGSVTEDVVTGYRMHNRGWKSVYCVTKRDAFRGTAPINLTDRLHQVLRWATGSVEIFFSRNNALLASSRLKFLQRIAYLNVGIYPFTSIFLIVYCFLPALSLFTGQFIVQSLQVTFLVYLLGITLTLVLLAALEIKWSGIELEEWWRNEQFWLIGGTSAHLAAVLQGLLKVMAGIEISFTLTSKSAGDDENDEYADLYVIKWTSLMIPPITIMMVNLIAIAVAVSRTIYSDDRQWSSLLGGVFFSFWVLAHLYPFAKGLMGRRGRTPTIVFVWSGLISITISLLWVAIDPPSGSSQIGGSFQFP 1124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1981 1124 Pfam Cellulose synthase 354 1113 IPR005150 GO:0016020|GO:0016760|GO:0030244
Ssu2g1981 1124 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 90 171 IPR013083 -
Ssu2g1981 1124 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 48 1122 - -
Ssu2g1981 1124 SUPERFAMILY Nucleotide-diphospho-sugar transferases 369 696 IPR029044 -
Ssu2g1981 1124 SUPERFAMILY RING/U-box 92 168 - -
Ssu2g1981 1124 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 555 710 IPR029044 -
Ssu2g1981 1124 PANTHER CELLULOSE SYNTHASE-LIKE PROTEIN 48 1122 - -
Ssu2g1981 1124 Pfam RING/Ubox like zinc-binding domain 109 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g1981 Ssu-Chr2 72620439 72624516 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g1981 7 1124 Glycosyltransferase AT3G03050 76.507 0.0 1782
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g1981 K20924 - gmx:100813900 2014.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g1981 2 72620439 72624516 Ssu2g1981 2 72620439 72624516 ECH