Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1979 ATGAGCACGACCCGTTCTCCTCCAGGTTACTGTGCGGCACACGCCATCCCCTCTCTCCGCCTCAcgaacaaaaatatgtttatccTCTCCACGCCGCCAACCACATTCTTCGCCACTCCAACTCCTAGGGTTCCCTTCCTCTCTTCACAGCCTTCTTCCTCCGTTTCTCTGCGATCCGCTTCCACTCCCTCGCCTTCTTGCTCCTCCATCACTCCCAAGGTTGAATCCAAGGATAACTACCTCGTCTCCGCCAAACATTCCCCCGCTAACATGTCCGCTTCCGTCTCTTCCCGCACTTTCCTCAACGCTCAAAACGAACAAGAGCTTCTTTCTGGAATCAGGAAGGAAGCAGATGCTGGATCTCTGCCTCCTAATGTTGCTGCAGGAATGGAAGAATTGTACCGTAACTATAAAAATGCAGTTATCCAAAGTGGAGATCCCAAGGCAAATGAGATTGTATTGTCGAATATGATTGTTTTATTAGATCGCATATTTTTGGATGTGACGGATCCTTTTGTCTTTCAACCACACCACAAAGCAAAGAGAGAGCCTTTTGACTACTACATGCTTGGTCAAAATTATATCCGTCCTTTAGTTGATTTCAAAAATTCTTATGTTGGCAATATGCCCCTTTTCATTGAAATGGAAGAGAAACTTAAGCAGGGACACAACATCATCTTGATGTCAAATCACCAAAGTGAAGCTGATCCAGCCATCATTGCATTGCTGCTTGAAACACAACTCCCATACATTGCTGAAAACATGACCTATATAGCAGGAGATAGAGTTATAACTGATCCTCTGTGCAAACCTTTCAGTATTGGCAGgaatCTCATTTGTGTTTACTCTAAAAAGCACATGCTTGATGATCCAGCACTTATAGAGATGAAAAGAATAGCAAATATACGAAGTCTGAAGGAAATGGCTATGCTTTTACGGAGTGGATCACAGATAGTCTGGATTGCCCCAAGCGGCGGTAGGGATCGCCCAGATCCCCACACCGGAGAATGGGTGCCAGCACCCTTTGATACTTCTTCGGTAGATAATATGCGAAGACTTGTTGAACATTCCGGTCCACCAGGCCATGTATATACTTTGGCGATATTGTGCCATGATATAATGCCCCCTCCACTGAAGgttgaaaaagaaattggggagAAAAGAATTATATCCTTTCATGGGGCTGGCATATCAGTGGCTCCAGTGATAAGTTTTTCTGAAACCACTGCTACTTGTGAAAATCCTGAAAAGGCTAAGGAGGTATTCTCAAAAGCCCTGTACGATTCTGTGACTGAGCAATATAATGTGCTGAAATCTGCGATACATGGCAAAAAGGGATTTGAAGCATCAACTCCTGTAGTTTCTTTGTCACAGCCATGGAAGTAG 1386 0.4336 MSTTRSPPGYCAAHAIPSLRLTNKNMFILSTPPTTFFATPTPRVPFLSSQPSSSVSLRSASTPSPSCSSITPKVESKDNYLVSAKHSPANMSASVSSRTFLNAQNEQELLSGIRKEADAGSLPPNVAAGMEELYRNYKNAVIQSGDPKANEIVLSNMIVLLDRIFLDVTDPFVFQPHHKAKREPFDYYMLGQNYIRPLVDFKNSYVGNMPLFIEMEEKLKQGHNIILMSNHQSEADPAIIALLLETQLPYIAENMTYIAGDRVITDPLCKPFSIGRNLICVYSKKHMLDDPALIEMKRIANIRSLKEMAMLLRSGSQIVWIAPSGGRDRPDPHTGEWVPAPFDTSSVDNMRRLVEHSGPPGHVYTLAILCHDIMPPPLKVEKEIGEKRIISFHGAGISVAPVISFSETTATCENPEKAKEVFSKALYDSVTEQYNVLKSAIHGKKGFEASTPVVSLSQPWK 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1979 461 PIRSF G3POAT 6 461 IPR016222 GO:0004366|GO:0006650
Ssu2g1979 461 Gene3D - 95 170 IPR038114 -
Ssu2g1979 461 Gene3D - 171 452 - -
Ssu2g1979 461 PANTHER GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE, CHLOROPLASTIC 56 461 IPR016222 GO:0004366|GO:0006650
Ssu2g1979 461 Pfam Glycerol-3-phosphate acyltransferase N-terminal 97 172 IPR023083 GO:0004366
Ssu2g1979 461 PANTHER GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE, CHLOROPLASTIC 56 461 - -
Ssu2g1979 461 SUPERFAMILY Glycerol-3-phosphate (1)-acyltransferase 97 460 - -
Ssu2g1979 461 Pfam Acyltransferase 213 366 IPR002123 GO:0016746
Ssu2g1979 461 SMART plsc_2 225 371 IPR002123 GO:0016746
Ssu2g1979 461 MobiDBLite consensus disorder prediction 49 71 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g1979 83 460 Acyl Lipid Metabolism Gene Families AT1G32200 68.519 0.0 568
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g1979 K00630 - gmx:100800190 768.844
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g1979 2 72552517 72560469 Ssu2g1979 2 72552517 72560469 ECH