Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1970 ATGGAAGCAAAAATCGCAAAGGTATCGGATAGGGTTGCACGTCTGAAGCGAAAGTGGGCGACACGATATGCTGCACATTTAAGTGGAGCTTCGCAACCAATTTTAGGTCATTGGCCATCATTTACATCACCAACAAGCAGGGTTGTCAAACGGATGAGATTGGGTGGATATAGAAACAAGATGACAAATGGTGGTCCAATTGGACAGTCCTTAGTTAGGcgttttttgaattataaaaagagTGGGAGACTAGAGCGTTTGATGTTCTATAAGAATGGTGAATGGTTGAACTTTCCTAAGGATGTTGTTGATTTGGTTAAGAAAGATCTTGAAGATAAGAAGGTAGCCGTGGAGATTGACTTAAATGGCCATCATcttgtgtttgatttttttcatcTGCATAAGGTGGACCTGAAAACTGGCTTGCAACAACCTATAGCTTGTATTGATGAGGCAGGGTGCTGCTTTTTCCCTGAAATCTATGCTGCTTCTAATGAAGAACCTTATAATTTCTGCAAACAAGAAGGTGAAAAAAGTCTGGAATCATATGAgtctaatgaaataaaattacatgtagAAGTTGAAATAAATGGAGTAGATCAATCCAGGTTGAGCGAGTGTAGTGGGGAGTCCAATGCTCTATATCAGGGTATTCAAATTGATACCAAACAAAATTGCTGTCAATATGATGTAGAAGTTGAAGATAGCATTAGCAAAAAGGACTGTGGAAATGTTGGTGAAGCCATTCAGCAAAATCAAGACATAGGTTTAGATGCTTATACTACTGAAGCGGTATAtggaaaattggatttgaattcTGTACAGAAGATGTTTCTTAAGGGAATGAGTAGTTTTGGCAGTACTGATTCTGACATAGTTGAGATTTGCCACTGCTCAGGTGTGTCAATGCAATCACGATGGGAGCTGTTCCAGAAGCAAgcagaaattacaaaaaaaaatcatggggAAGCTAACATTCGATATGCTTGGCTTGCTACTTCTAAAGGAGAACTATCTACAATGATGGAATATGGACTTGGTCATTGTAGACTGTCTGGATTAAAGTTCAGATATGGCATTGGTGTTCATCTTGCAGCTGTTACCTGCCCTGACGCCAGTGTGCGTTATTGTGATGTTGACGAAAACGGGGTTCGACACTTGGTCCTTTGTCGTGTAATAATGGGAAACATGGAGATTCTCCGTCCTGGCACTGGTCAGTCTCATCCCAGTAGTTGTGAATATGATAATGGGGTGGATGACATTCAATGTCCACGATACTATGTGGTGTGGAATATGAACATGAACACCCACATCTATCCAGAATTTGTTGTTGGCTTCAAGGTCTCTTCTGACGTTGAAGGTCATTTTTGTGAAAGTGAGGCTAAGAATGATTCTGGGGTTAATACAGTCTGTCACAGTCCTCATGGCATGTTGCATTCAGAATCTTCTACAGTAGATAACGGAAAAGCTCCGAGTATGGTTGCTAGCACCCCAAAAGTTCCAAAATCCCCTTGGATGCCTTTTCCTGTGCTTTTTGCTGCTATCGGAAACCAGGTTCCTCCCAAGGATATGAATCTTATCAAAACACATTATGAACAATTCAGGTCAAAGCAAATATCCCGGGATGATTTTGTGAAGATGCTGAGGTTAATAGTTGGAGATGCTCTGTTGAGAGCTACAATAACAAATCTTCAGTTCAagATACCATCCAATGGTGAATTGAAAGACTCAAACAAGAAGGAAGGCTAA 1749 0.3842 MEAKIAKVSDRVARLKRKWATRYAAHLSGASQPILGHWPSFTSPTSRVVKRMRLGGYRNKMTNGGPIGQSLVRRFLNYKKSGRLERLMFYKNGEWLNFPKDVVDLVKKDLEDKKVAVEIDLNGHHLVFDFFHLHKVDLKTGLQQPIACIDEAGCCFFPEIYAASNEEPYNFCKQEGEKSLESYESNEIKLHVEVEINGVDQSRLSECSGESNALYQGIQIDTKQNCCQYDVEVEDSISKKDCGNVGEAIQQNQDIGLDAYTTEAVYGKLDLNSVQKMFLKGMSSFGSTDSDIVEICHCSGVSMQSRWELFQKQAEITKKNHGEANIRYAWLATSKGELSTMMEYGLGHCRLSGLKFRYGIGVHLAAVTCPDASVRYCDVDENGVRHLVLCRVIMGNMEILRPGTGQSHPSSCEYDNGVDDIQCPRYYVVWNMNMNTHIYPEFVVGFKVSSDVEGHFCESEAKNDSGVNTVCHSPHGMLHSESSTVDNGKAPSMVASTPKVPKSPWMPFPVLFAAIGNQVPPKDMNLIKTHYEQFRSKQISRDDFVKMLRLIVGDALLRATITNLQFKIPSNGELKDSNKKEG 582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1970 582 PANTHER INACTIVE POLY [ADP-RIBOSE] POLYMERASE SRO4-RELATED 1 568 IPR044964 -
Ssu2g1970 582 ProSiteProfiles PARP catalytic domain profile. 248 467 IPR012317 GO:0003950
Ssu2g1970 582 ProSiteProfiles RST domain profile. 499 570 IPR022003 -
Ssu2g1970 582 Pfam RCD1-SRO-TAF4 (RST) plant domain 501 565 IPR022003 -
Ssu2g1970 582 SUPERFAMILY ADP-ribosylation 272 447 - -
Ssu2g1970 582 PANTHER INACTIVE POLY [ADP-RIBOSE] POLYMERASE SRO1-RELATED 1 568 - -
Ssu2g1970 582 Gene3D - 267 448 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g1970 Ssu-Chr2 72365163 72368887 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g1970 - - gmx:100797549 980.704
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g1970 2 72365163 72368887 Ssu2g1970 2 72365163 72368887 ECH