Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1965 ATGTCGatAGAAACTGTTAGAGTCAGTAATGTTTCCTTAGGAGCAACTGACCAAGACATTAGggagttcttttctttttctggtGATATTGAGTATGTTGAACTACAGAGTCATGATGAACGATCTCAAACTGCTTATATTACCTTCAAGGATTCACAGGGAGCGGAGACTGCAGTACTGCTTTCGGGAGCAACAATAGTTGATATGTCAGTTACAATAACTCTGGATCCAGATTACAAGCTTCCACCTGCTGCCTTAGCCTCATCTGTAAAAGAAAGTCAGACTCCTGGTGGTGCTGAATCTGCTTTACGGAAGGCAGAGGATGTGGTCTCTGGCATGCTAGCCAAGGGCTTTATCTTAGGGAAAGATGCTGTCAACAAAGCAAAGACCTTTGACGAGAAGCACCAGTTATCATCCACAGCCTCAGCAAAAGTTGCATCTTTTGATCAGAAAATTGGGCTTAGTGAGAAAATAAGTGCTGGTGCTACAGTTGTGGGTGATAGAGTTCGAGAAGTGGACCAAAAGTTTCAGGTTTCAGAAAAGACCAAATCAGCATTTGCGGCTGCAGAACATACAGTCAGTAATGCTGGTTCTGCCATAATGAAGAATCGCTATGTGCTTACTGGGGCATCCTGGGTAACTGGTGCTTTTAGTAAGGTTTCTAAGGCGGCTGGGGAAGTAGGACAGAAGACAAAAGAGAAAGTGGAGAATGCAGAAGAGCAACAGACCCGAAAAGTGGAAGAACAGTATGCACAGGTCCTTTCTGAGGCCCCAAAAGCAGCAGAAGCAACTGAGCAGCAGTCTTCCAAGCCTGCTCCTGCTCAGGGTTTGATCCTTTGA 840 0.4393 MSIETVRVSNVSLGATDQDIREFFSFSGDIEYVELQSHDERSQTAYITFKDSQGAETAVLLSGATIVDMSVTITLDPDYKLPPAALASSVKESQTPGGAESALRKAEDVVSGMLAKGFILGKDAVNKAKTFDEKHQLSSTASAKVASFDQKIGLSEKISAGATVVGDRVREVDQKFQVSEKTKSAFAAAEHTVSNAGSAIMKNRYVLTGASWVTGAFSKVSKAAGEVGQKTKEKVENAEEQQTRKVEEQYAQVLSEAPKAAEATEQQSSKPAPAQGLIL 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1965 279 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 6 66 IPR000504 GO:0003723
Ssu2g1965 279 SUPERFAMILY RNA-binding domain, RBD 5 81 IPR035979 GO:0003676
Ssu2g1965 279 Coils Coil 232 252 - -
Ssu2g1965 279 MobiDBLite consensus disorder prediction 226 246 - -
Ssu2g1965 279 MobiDBLite consensus disorder prediction 226 279 - -
Ssu2g1965 279 SMART rrm1_1 5 74 IPR000504 GO:0003723
Ssu2g1965 279 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 1 265 - -
Ssu2g1965 279 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 4 78 IPR000504 GO:0003723
Ssu2g1965 279 Gene3D - 2 74 IPR012677 -
Ssu2g1965 279 PANTHER BINDING PARTNER OF ACD11 1 1 265 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g1965 Ssu-Chr2 72245657 72248991 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g1965 - - gmx:100809613 489.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g1965 2 72245657 72248991 Ssu2g1965 2 72245657 72248991 ECH