Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1959 ATGTCGCTGATATGCTTTCGTGGGTGTGGTTTACTCCGCCGCAAAGTGCAGTCCCAACGCCAATGTTTGTTCAGGTTCTCATCTTCTGCTTCTTCTGCATTGATGTTGGAAGACCACGTGTTTGATGAAAGTCCAAAATCTTATGCCACTTTTGTGATTAATAGGCCTGCACCCCGTGTTCCCACAACAAGGAGGGAGTTGTTTCCTTTAGCGGCTAGGGTGTTCAAATCACTGAGTTGGAGGGTGGCAAGAGAAATAAGGTTTGGGAGTTGGGTTGAGAGTCATGGGTTTTCTCATTCCATCAGTTGCTTTAGGATTATCATTCACGCGTTTGCTTTGGCAGGCATGCGGTTGGAAGTGTTTGCTTTGCTTAGAGATGTTGTTGGGTACTGTAATGAGGCAAAGCATGAtacatttgaattgttttcaaCTTTGCTGGATTCACCCCACCATGTGGAAAGATCTGGTGTCGTGTTTGATGTGCTCATAAAAGTGTTTGCATCCAACTCTATGCTGGAAAATGCTCTTGATGTGTTTGTGAATGCTAAGCATGTTGGGCTTGAGCCTGATATAAGGACTTGCAATTTCTTGTTGAAATGTTTGGTTGAGGCAAATAGAGTGGAGTTTGTTAGACGGTTTTTTGAGGAATTGAAGGACTGTGGTCCGACGCCAAATATCTACACCTATACAATCATGATGAACTTTTATTGTGGTGATGTTGGGCATgatgcaggtatgagactggcTGCTGTGATTCTAGGAAAAATATATCAGAGTGGGGAAAAGCCGACTGTTGTCACGTATAGTACATATATTCATGGACTTTGTAAAGATGGTTATGTTGAGGCTGCTCTGACGTTACTTCGCAACTTGCACTATAAAAACCAGCCTCTCAATAGCCATTCTTTTAATGCTGTAATTTATGGGTTTTGTAAAAGAGAGGAAGTATGTGAGGCTTTGCAAGTTTTGGAAGAAATGAAGAGCTCTGGGATATTGCCAGATGTTTATAGCTACAGCATCTTAATTGATGCATTCTGCAAGAAAGGGGACGTAGTGAAATGTCTTGACTTGATGGAGGAAATGGAACACTCCCAGATAAAACCATCCATTGTTAGCTACACCTCCCTCATCCATGGTCTGTGTAAGAAGAATCTGGTCCAAAATGCAGTGGATATATTCCGTAGTATTGGTGCTTCTAGTTGCAAATATGATCTGACTGTTTATGAAACTTTAATTGATGGATTTTGCATTCAAGGTGATGTGAATTCAGCCATCAAGGTTTTGGAGGAGATGATCAGCAATAATTTGGTTCCTACTGCCTTTAGTTGCCGCAGTCTAATTAGGGGATACTGCAAACTGGGACTATTCGATCAGGCATTGGAAGTTTTTAATACCATGCTACGAGATGGTATTTGGCCAGATACTATCGCTTGCAATTATATTCTTGATGGATCCTGCAGGGCAGGGCACTTCAAGGAAGCCTTGTCACTGTTGGAGGACTTCCAAGAACATGGATTTAACCTCAACCCACATTCGTATAATGCAATCATCTACAAACTTTGTAAAGAAAGTTATACAGAAAGAGCATTGGAGCTCCTGCCAAGAATGCTTAAAAGGAATGTACTTCCGGCAGTTGTTAATTATAGTACTCTTATATCTGGCTTTGCCAAACAGTCAAATTTAAAAAGGGCAGTGAAGTTATTCACGAGAATGGTAAAAGTGGGGATCACTTTCAACACTGCCACATATACAATTCTTATTAGCATATTTAGCCATAGTCGCAAAATGCATGAAGCATATGGCATTTTtaaggaaatgaaagaaaggGGTTTGCATTCAGATCAGATTTTGTATACAACTTTAATAGCTGGCTTTTGtaataatagagaaatgaaaaaggcATGGGCATTATTTGAAGAAATGTCAAGGGAAGGCTGTTCGCCAAATGTAATTACTTATACTTGTTTGATTGATGGATTTTGTAAGTCAAACAGGATAGATTTGGCCACCTTGCTATTTGATAAAATGAACAGGGATTCAGTTATTCCTGATGTTGTAACTTACACTGTTCTCATTGCTTGGTACCATAAGCATGGGTACATAGATCAGGCACATAAGCTATATGATGTAATGAAGGCAAAGGGTGTTTTGCCAGATGATAGAACTCATGAGGTTCTTGGTCTGAAAGCTGGTGCAGTTCAATAA 2205 0.39 MSLICFRGCGLLRRKVQSQRQCLFRFSSSASSALMLEDHVFDESPKSYATFVINRPAPRVPTTRRELFPLAARVFKSLSWRVAREIRFGSWVESHGFSHSISCFRIIIHAFALAGMRLEVFALLRDVVGYCNEAKHDTFELFSTLLDSPHHVERSGVVFDVLIKVFASNSMLENALDVFVNAKHVGLEPDIRTCNFLLKCLVEANRVEFVRRFFEELKDCGPTPNIYTYTIMMNFYCGDVGHDAGMRLAAVILGKIYQSGEKPTVVTYSTYIHGLCKDGYVEAALTLLRNLHYKNQPLNSHSFNAVIYGFCKREEVCEALQVLEEMKSSGILPDVYSYSILIDAFCKKGDVVKCLDLMEEMEHSQIKPSIVSYTSLIHGLCKKNLVQNAVDIFRSIGASSCKYDLTVYETLIDGFCIQGDVNSAIKVLEEMISNNLVPTAFSCRSLIRGYCKLGLFDQALEVFNTMLRDGIWPDTIACNYILDGSCRAGHFKEALSLLEDFQEHGFNLNPHSYNAIIYKLCKESYTERALELLPRMLKRNVLPAVVNYSTLISGFAKQSNLKRAVKLFTRMVKVGITFNTATYTILISIFSHSRKMHEAYGIFKEMKERGLHSDQILYTTLIAGFCNNREMKKAWALFEEMSREGCSPNVITYTCLIDGFCKSNRIDLATLLFDKMNRDSVIPDVVTYTVLIAWYHKHGYIDQAHKLYDVMKAKGVLPDDRTHEVLGLKAGAVQ 734
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1959 734 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 2 723 - -
Ssu2g1959 734 Gene3D Tetratricopeptide repeat domain 242 361 IPR011990 GO:0005515
Ssu2g1959 734 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 579 613 IPR002885 -
Ssu2g1959 734 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 544 578 IPR002885 -
Ssu2g1959 734 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 190 224 IPR002885 -
Ssu2g1959 734 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 509 543 IPR002885 -
Ssu2g1959 734 Gene3D Tetratricopeptide repeat domain 429 570 IPR011990 GO:0005515
Ssu2g1959 734 Pfam PPR repeat 260 289 IPR002885 -
Ssu2g1959 734 Pfam PPR repeat 366 394 IPR002885 -
Ssu2g1959 734 Gene3D Tetratricopeptide repeat domain 642 715 IPR011990 GO:0005515
Ssu2g1959 734 Gene3D Tetratricopeptide repeat domain 362 428 IPR011990 GO:0005515
Ssu2g1959 734 Gene3D Tetratricopeptide repeat domain 571 641 IPR011990 GO:0005515
Ssu2g1959 734 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 369 403 IPR002885 -
Ssu2g1959 734 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 404 438 IPR002885 -
Ssu2g1959 734 PANTHER (PPR) REPEAT PROTEIN, PUTATIVE-RELATED 2 723 - -
Ssu2g1959 734 TIGRFAM PPR: pentatricopeptide repeat domain 302 335 IPR002885 -
Ssu2g1959 734 TIGRFAM PPR: pentatricopeptide repeat domain 548 579 IPR002885 -
Ssu2g1959 734 TIGRFAM PPR: pentatricopeptide repeat domain 617 650 IPR002885 -
Ssu2g1959 734 TIGRFAM PPR: pentatricopeptide repeat domain 407 439 IPR002885 -
Ssu2g1959 734 TIGRFAM PPR: pentatricopeptide repeat domain 193 225 IPR002885 -
Ssu2g1959 734 TIGRFAM PPR: pentatricopeptide repeat domain 582 614 IPR002885 -
Ssu2g1959 734 TIGRFAM PPR: pentatricopeptide repeat domain 477 509 IPR002885 -
Ssu2g1959 734 TIGRFAM PPR: pentatricopeptide repeat domain 686 719 IPR002885 -
Ssu2g1959 734 TIGRFAM PPR: pentatricopeptide repeat domain 651 685 IPR002885 -
Ssu2g1959 734 TIGRFAM PPR: pentatricopeptide repeat domain 266 290 IPR002885 -
Ssu2g1959 734 TIGRFAM PPR: pentatricopeptide repeat domain 442 474 IPR002885 -
Ssu2g1959 734 TIGRFAM PPR: pentatricopeptide repeat domain 336 369 IPR002885 -
Ssu2g1959 734 TIGRFAM PPR: pentatricopeptide repeat domain 371 404 IPR002885 -
Ssu2g1959 734 TIGRFAM PPR: pentatricopeptide repeat domain 511 543 IPR002885 -
Ssu2g1959 734 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 264 298 IPR002885 -
Ssu2g1959 734 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 439 473 IPR002885 -
Ssu2g1959 734 SUPERFAMILY TPR-like 441 640 IPR011990 GO:0005515
Ssu2g1959 734 Gene3D Tetratricopeptide repeat domain 129 241 IPR011990 GO:0005515
Ssu2g1959 734 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 334 368 IPR002885 -
Ssu2g1959 734 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 649 683 IPR002885 -
Ssu2g1959 734 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 474 508 IPR002885 -
Ssu2g1959 734 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 299 333 IPR002885 -
Ssu2g1959 734 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 614 648 IPR002885 -
Ssu2g1959 734 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 684 718 IPR002885 -
Ssu2g1959 734 Pfam PPR repeat family 543 588 IPR002885 -
Ssu2g1959 734 Pfam PPR repeat family 189 237 IPR002885 -
Ssu2g1959 734 Pfam PPR repeat family 299 347 IPR002885 -
Ssu2g1959 734 Pfam PPR repeat family 473 522 IPR002885 -
Ssu2g1959 734 Pfam PPR repeat family 683 726 IPR002885 -
Ssu2g1959 734 Pfam PPR repeat family 406 452 IPR002885 -
Ssu2g1959 734 Pfam PPR repeat family 614 662 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g1959 207 726 Glycosyltransferase AT1G05670 30.019 7.31e-73 249
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g1959 - - gmx:100818511 1305.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g1959 2 72201247 72203451 Ssu2g1959 2 72201247 72203451 ECH