Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1932 ATGTGTCTCTCACTGTCTTCGCCCGCTAAGGCCGCAGGGGAGCCAATTGATGCACCTCCCGCAGCGAATCTGTTTTCCGAAACCCTAGCTGCCTCCGAATCGGTCGCCGATTTTGACGGATATTCCGGTCAATCTCCGACTGGCGGTGATTCTACTCTTCCGGCGGGTTCCGGTGATTACGCCAGCGTGTTCGGCGAGGACGCTCCGCGAGAGGATCCCGGCATGTCTTCGCCGTTCCGGCAGCTCAACGATGACTCGTCTTCGCTGTGGTCGCCGGCGTTGGCTTCGAATTCGCGCGTCTCCGCGGCGGCTCCGGTGGCGTGGAGTGCTCCGCAAGGAAACTGGCTCTTACCTGAAAATGACGGTTCAAAGGAGGGAGAATCTGCTTATGAAGTTGTGCCTTCTAAGATgGGAGCAGGGCTTTTGAATCTTGGCAATACGTGCTTTCTTAATGCAATCCTTCAATGCTTTACGCACACGGTGCCACTAGTGCAGGGTCTTCGTTCGTGCACTCACCCTTCCCCTTGTGCTGGTCATATGGATGGGTTCTGTGTTATTTGTGCTCTTCGTTGCCAGGTTGAAAGTTCCTTGGTGGCTTCAGGACGGACTCTGTCACCCTTGAAATTTGTGAACAATTTGAACCATTTTTCTTCTGTATTTAGAAGATACCAGCAGGAGGATGCCCATGAATTTATGCAGTGTGCCTTGGATAAACTGGAAAGATGTTTCCTAGATTTGAGGAAgagcaatttaaattttgaagacgATAATCTTGTAGAGAAAGTATTTGGAGGTCGTCTCATTAGCAAACTTCAATGTTGTAGCTGTGGCCACACTTCTGACACTTATGAGCCACTAATTGATATGAGTTTAGAGATAGAAAATGTAGATTCTCTTCCATGTGCTCTGGAATCTTTTACTAAGGTGGAAAACATTGATGCAAAGTTTAGATGTGATAGCTGCAAGGAAGAAGTGTCCATGGAGAAGCAGCTTATGTTGGATCAGACACCATTAGTTGCAACATTTCATTTAAAGAGGTTTAAGACAGATGGGACCCATGTTGAAAAGATTGATAAGCATATTGATTTCCCATTGGAGTTAGACTTGCAGCCTTACACtatttcaaatcaaaacaaTGATGTACAGttgaaatatgatttatatgccaTTGTTGTGCATACTGGATTTTCATCTACTTCAGGGCATTACTTCTGCTTTGTTCGCTCTGCCCCAGACACATGGCATAAGTTGGATGATTCAATGGTTACTAAGGTCTCAGGAGATTCTGCACTGTCTCAGGAAGCCTACATATTGTTTTATGCGCAACAGGGTACTCCATGGTTTTCGAGTATTATGGAATTTCAAACACAATGCTTGGATCCGAATATTATGGGTACATCTCCTAAGTCTGTTTTAGACGTTGGTGACAGCATGTATAAATCAGattctattttaattcctaatatTGAAAGAGGTGGAGCTGGTGAATCCAAAGAATGTTCTGAGCCGCAGTTTGATTATGATTGTCGAGAAGAACacaattttcttgaaataaatgACACTAGTGATGCTACTCATGGCTGCGGACAATTTCCCTCTGGGTCAAATCAGGAAAGCGTTGATTTGAATAGCTGTAAAGATGATGCCCAAGTGCTGTTTAGGAATAATGCCACCTTGGAAGGTAGTGCCATGATTGATGGAAATTCATATATTGAGAATGGTGGTCTTGATAATAACGGTAACTGTCAGGAAGTTGTTGACTTTAGAGAGAATGCTGGTTTCCATTCTTTAACTCCGCCGAGCTCCCCTTCTGATGATGCTACAGATAAGTTTTATGTCTCACGTGATAATTTGAAGAAAGAGAAGCATGGGAGCTCACGTGATAATttgaagaaggagaagcacGGGAGCTGTAAAAGACCATCAAATAAGTTAATGGAGGATCCTGAAAGACGAATAGCCGTGAAATATCTCAAGAACAAGATGCCTGGTTCAAGGAGAGGGGCACTTTTGCAATTTGTTAGTCAGAGTGAAGTTTTggacaagaagagaaaaaggatgGATTCATCGCAGTGTAAGAAAAGCAACACTCTTGGTGATCGCAAAAAATCAAACCATACATCTGTCAGTCGCCCTGTGGCAGCTGGAATTTCACAGTGA 2160 0.4208 MCLSLSSPAKAAGEPIDAPPAANLFSETLAASESVADFDGYSGQSPTGGDSTLPAGSGDYASVFGEDAPREDPGMSSPFRQLNDDSSSLWSPALASNSRVSAAAPVAWSAPQGNWLLPENDGSKEGESAYEVVPSKMGAGLLNLGNTCFLNAILQCFTHTVPLVQGLRSCTHPSPCAGHMDGFCVICALRCQVESSLVASGRTLSPLKFVNNLNHFSSVFRRYQQEDAHEFMQCALDKLERCFLDLRKSNLNFEDDNLVEKVFGGRLISKLQCCSCGHTSDTYEPLIDMSLEIENVDSLPCALESFTKVENIDAKFRCDSCKEEVSMEKQLMLDQTPLVATFHLKRFKTDGTHVEKIDKHIDFPLELDLQPYTISNQNNDVQLKYDLYAIVVHTGFSSTSGHYFCFVRSAPDTWHKLDDSMVTKVSGDSALSQEAYILFYAQQGTPWFSSIMEFQTQCLDPNIMGTSPKSVLDVGDSMYKSDSILIPNIERGGAGESKECSEPQFDYDCREEHNFLEINDTSDATHGCGQFPSGSNQESVDLNSCKDDAQVLFRNNATLEGSAMIDGNSYIENGGLDNNGNCQEVVDFRENAGFHSLTPPSSPSDDATDKFYVSRDNLKKEKHGSSRDNLKKEKHGSCKRPSNKLMEDPERRIAVKYLKNKMPGSRRGALLQFVSQSEVLDKKRKRMDSSQCKKSNTLGDRKKSNHTSVSRPVAAGISQ 719
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1932 719 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 101 475 - -
Ssu2g1932 719 MobiDBLite consensus disorder prediction 36 84 - -
Ssu2g1932 719 MobiDBLite consensus disorder prediction 679 707 - -
Ssu2g1932 719 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 385 403 IPR018200 GO:0004843|GO:0006511
Ssu2g1932 719 MobiDBLite consensus disorder prediction 1 20 - -
Ssu2g1932 719 SUPERFAMILY Cysteine proteinases 138 442 IPR038765 -
Ssu2g1932 719 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 140 155 IPR018200 GO:0004843|GO:0006511
Ssu2g1932 719 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 101 475 - -
Ssu2g1932 719 MobiDBLite consensus disorder prediction 616 649 - -
Ssu2g1932 719 MobiDBLite consensus disorder prediction 679 719 - -
Ssu2g1932 719 Gene3D Cysteine proteinases 135 447 - -
Ssu2g1932 719 Pfam Ubiquitin carboxyl-terminal hydrolase 140 440 IPR001394 GO:0004843|GO:0016579
Ssu2g1932 719 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 139 443 IPR028889 -
Ssu2g1932 719 MobiDBLite consensus disorder prediction 38 52 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g1932 Ssu-Chr2 71777690 71781341 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g1932 134 442 Miscellaneous Gene Families AT4G31670 34.277 7.17e-51 186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g1932 K11855 - gmx:100808015 1006.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g1932 2 71777690 71781341 Ssu2g1932 2 71777690 71781341 ECH