Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1890 ATGCAAGACCCCACTTCCGAGCCCGATCGCCACCCCCACCACGAAACGTCGCCGTCGTCTAAGCGCGGCGCCCGCGCGAAGCGCCCCGTGTTCAAGGTCCTCCCGGGGCAGATCGCTTTCCGCCTGGTGTGCCACGCGTCCATCGTCGGCGGCCTCATCGGGAGCTCCGGCTCCATCGTGTCGCAGCTCCGGCGAGAGACCGGGTGCAAAATCCACTGCGAGGACTCCCCCGCCAGCACCGAGGACCGGGTCATCTTGGTAATCGGGTCGCTGTCGCCCCGAAAGGGCCTCGAGCTGGGCGACGGGGAAGTCGAGGTTTCCAACGCGCAGGAAGCGGTCGTTAGGGTTTTTGAGAGGGTTTGGGAGCTCGAGGCCGACAAAGGGGTTAACGCTAACAGAGCCGTTAACGGCGAGGTTTTTTCTAAGTTGCTTGCACACACTTCGCAGATTGGCGCTGTTGTTGGCAAAGGAGGGAAGAACATAACCGCCATTAGGAACAGTAGTGGTGCCAAAATTAGGGTTTGCCCTCCTCCACAATGCGCCGCTAAAGACGAGGAGTTAGTTCAaATAACTGGTGGAATTTTGGCTGCAAAGAAAGCGCTGATTTCTGTATCTCATTGTCTTCAAGATTGTCCGCCATTATGCAAAGTTCCAGTTTCTTCCAGTACACCAACTGTTAGCTCTTCTGATAGGTCGTCCTCTGATCCCAATGCTGACCTTTTTCCTCACCTTAATTCATTGTTAACCTCCATGGACGGGTTATCTATATATGATGCTTCAAAACGGACCACAAACTCTAATGAATCCTCTGGCTGGGACTCTAAAGGTACAGAACACGAAGTTGTGTTCAGACTTCTTTGTTCTAATAATGTAGCTGGGAGCGTGATTGGCAAAAGAGGGGCTATAGTCAGAGCTCTGGAAAGCCAAACAGGTGCTTCTATTATCTTTGCAGCTCCTTTAAGCGAGTTTGCCGAGCGCATTGTCACCATTTCTGCTACAGAGAACCTTGAAGCTCCTGATTCTCCTGCACAACGTGCTGTTAGTCTTGTCTTTGCTAGAATTATTGAAGATCACATTGGAAAGGGTTTTCTACCTGTCTCTAGTATGGAATCACCAGTAACTGCAAGGCTTTTAGTTGCAACAAGCACAGTAAATTGCTTGAGTGGCAATGATGGTCAGGTGATTTCAGAATTGAGAGAAGTAACTGGGGCTGATATACAAATATTGCATGGAGAGCCAGTTCCTAATGGTGCTTCAGACAATGACGTGGTGGTGCAGATCACTGGAGGGTACATATGTGTACAAAATGCCCTATATAAAATCACTTGCAGAATCAGGGATAATCTTTTGCCCAATGAGGTGGTTTCTGAAGCAAGAATGAAACCCAATTGGAAAGTGAATAAGGATCCTGTAAAGGGTAAACATTTTCCCCGTGGAAAATCTTCTTTTCCTTCTGGGAGGTTTATGCCACAGAATGCAGGGGTGCATGCTGAAACAATATCACAAAATGGAGAATTACATACGGATTTAAGTGAGAATTTGGAACGTGGGAGGGGAAACATGTTTGCTACGGTGACAAATACTACTGTGGAGATTATAGTTTCTGAACATGTCTTTGGTTCTGTTTATGGTGAAGATGGTGGCAATTTGGATCGAATCAGACAGATTTCAGGTGCAAGTGTAACGGTTTATGATCCTTCCGCGGGTACAAGTGGAGGGAAAGTTGTCATATCTGGGACACCTGATCAAACCTTTGCAGCGCAGAGCTTGCTTCAAGCCTTTATTCAAACGGGACAAGTAAGCTGA 1806 0.4834 MQDPTSEPDRHPHHETSPSSKRGARAKRPVFKVLPGQIAFRLVCHASIVGGLIGSSGSIVSQLRRETGCKIHCEDSPASTEDRVILVIGSLSPRKGLELGDGEVEVSNAQEAVVRVFERVWELEADKGVNANRAVNGEVFSKLLAHTSQIGAVVGKGGKNITAIRNSSGAKIRVCPPPQCAAKDEELVQITGGILAAKKALISVSHCLQDCPPLCKVPVSSSTPTVSSSDRSSSDPNADLFPHLNSLLTSMDGLSIYDASKRTTNSNESSGWDSKGTEHEVVFRLLCSNNVAGSVIGKRGAIVRALESQTGASIIFAAPLSEFAERIVTISATENLEAPDSPAQRAVSLVFARIIEDHIGKGFLPVSSMESPVTARLLVATSTVNCLSGNDGQVISELREVTGADIQILHGEPVPNGASDNDVVVQITGGYICVQNALYKITCRIRDNLLPNEVVSEARMKPNWKVNKDPVKGKHFPRGKSSFPSGRFMPQNAGVHAETISQNGELHTDLSENLERGRGNMFATVTNTTVEIIVSEHVFGSVYGEDGGNLDRIRQISGASVTVYDPSAGTSGGKVVISGTPDQTFAAQSLLQAFIQTGQVS 601
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1890 601 Gene3D K Homology domain, type 1 37 122 IPR036612 GO:0003723
Ssu2g1890 601 CDD PCBP_like_KH 40 117 - -
Ssu2g1890 601 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 280 363 IPR036612 GO:0003723
Ssu2g1890 601 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 134 212 IPR036612 GO:0003723
Ssu2g1890 601 CDD PCBP_like_KH 282 351 - -
Ssu2g1890 601 Gene3D K Homology domain, type 1 524 598 IPR036612 GO:0003723
Ssu2g1890 601 Gene3D K Homology domain, type 1 136 212 IPR036612 GO:0003723
Ssu2g1890 601 ProSiteProfiles Type-1 KH domain profile. 527 591 - -
Ssu2g1890 601 MobiDBLite consensus disorder prediction 1 27 - -
Ssu2g1890 601 MobiDBLite consensus disorder prediction 1 22 - -
Ssu2g1890 601 ProSiteProfiles Type-1 KH domain profile. 138 204 - -
Ssu2g1890 601 ProSiteProfiles Type-1 KH domain profile. 372 441 - -
Ssu2g1890 601 ProSiteProfiles Type-1 KH domain profile. 37 113 - -
Ssu2g1890 601 SMART kh_6 36 118 IPR004087 GO:0003676
Ssu2g1890 601 SMART kh_6 526 596 IPR004087 GO:0003676
Ssu2g1890 601 SMART kh_6 371 446 IPR004087 GO:0003676
Ssu2g1890 601 SMART kh_6 279 355 IPR004087 GO:0003676
Ssu2g1890 601 SMART kh_6 137 209 IPR004087 GO:0003676
Ssu2g1890 601 Pfam KH domain 283 335 IPR004088 GO:0003723
Ssu2g1890 601 Pfam KH domain 41 90 IPR004088 GO:0003723
Ssu2g1890 601 Pfam KH domain 529 592 IPR004088 GO:0003723
Ssu2g1890 601 Pfam KH domain 143 201 IPR004088 GO:0003723
Ssu2g1890 601 Pfam KH domain 374 441 IPR004088 GO:0003723
Ssu2g1890 601 MobiDBLite consensus disorder prediction 466 487 - -
Ssu2g1890 601 PANTHER RNA-BINDING KH DOMAIN-CONTAINING PROTEIN 22 477 - -
Ssu2g1890 601 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 29 91 IPR036612 GO:0003723
Ssu2g1890 601 CDD PCBP_like_KH 142 205 - -
Ssu2g1890 601 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 22 477 - -
Ssu2g1890 601 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 527 596 IPR036612 GO:0003723
Ssu2g1890 601 CDD KH-I 529 592 - -
Ssu2g1890 601 ProSiteProfiles Type-1 KH domain profile. 280 350 - -
Ssu2g1890 601 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 366 450 IPR036612 GO:0003723
Ssu2g1890 601 Gene3D - 279 448 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g1890 Ssu-Chr2 70659371 70664419 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g1890 K21444 - gmx:100793130 981.474
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g1890 2 70659371 70664419 Ssu2g1890 2 70659371 70664419 ECH