Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1813 ATGACTTCCCTATACGAAGTACAATACCACCTCAAGATCCTAGAATTCTCGTTGCTTGTGTTGCATTTTTCTAGAAGTGACAAACAAAAAGGCCGTGAAGGAATGAAGAGGAACACAAGTTTTTCCTTGCTCTTTTTCCTGTCCTTGTTGGTGATTTTCTTTGTCACCTTCTCTATAATTTCTGTGGAAGCAAGGAAGACTAACAGCATGAAAAAACTTCACAAACGTCACAAAGATAGTCACAGTAGCAATGGCCACACTCGATGGTCACATTCTCCATGTCCAACGCCAACCCCTCGACCTTATTATGGTCCTCAAGGGAGCACCTTTGACGTTTTGTCTTTTGGCGCCAAAGGCAATGGAGTTTCTGATGATTCAGAGGCACTTCTAGCTGCATGGAAAGGTGCATGTAAAGTTGCCGGTGCTACAGTTAAAATTCCAGCACAACTCAAGTTCCTCATCAAACCTGTTACTTTACAAGGCCCTTGTATGCCTGACCTTACTCTTCAGATAGATGGAACTCTATTGGCACCTCCTGAAGCATCTTCCTGGCCAAAATCCAGTTTGTTTCAGTGGATAAATTTCAAGTGGGTGCAGAACTTCACCATCAAAGGCTCTGGCACTGTTGATGGCCAAGGCTGTAACTGGTGGAGCTCTTCAGAATTTTATGATATACAGGTAAAATTACCACAAAACCATATTCAAGCTATAAGATTCTACTCCAGTAACTTTGTCACGGTTCGGGATATCAGAATCATAAACAGTCCTCTGTGCCATCTAAAATTTGACAACTCAAATGGGATTAAAGTTGACAACATTACAATATCCTCCCCCGAGAATAGCCCAAACACTGATGGCATTCACTTACAAAACACACATGACGTAGAAATTCAACGTTCCATCATTGAAACAGgAGATGACTGTATATCCATCCAAACCGGTTGCTCTAACATTCATGTCCACCACATTAATTGTGGCCCTGGACATGGTATAAGTTTGGGAGGATTAGGAAAAGACAAGAGTGTGGCATGTGTGTCTGACATCACTGTTGAGGATATCTCTATGAAAAACACACTATATGGAGCAAGGATCAAAACATGGCAGgGAGGCATTGGTATGGTTAAAAATGTGTCATTTTCCAGAATTCAAGTCTATGAAGTTATGTTTCCAATAATGATAGACCAATACTATTGTGACAAGCAAATCTGCAAGAACCAGACAGGCACTGTGGTGATTTCTGGGGttaagtttgataaaataagTGGGACTTATGGGATGCAGCCTGTCCATCTAGCATGCAGCAATTCCATACCCTGCACAGATGTTGATTTAACTGATATTCAACTGAGTCCCTCCGCTAAATATAGAGGTTTACAACAAACTGTGTGCTGGAACTCTTATGGAAAATCACAAGGCCCCTTGCTACCTTCAAGCATTGATTATTGCCTGAGAAGTGGTGGTGGATTAATCAAGAGGATAGCAAGGTCACATGATAGAGTATGTTACTAA 1509 0.4109 MTSLYEVQYHLKILEFSLLVLHFSRSDKQKGREGMKRNTSFSLLFFLSLLVIFFVTFSIISVEARKTNSMKKLHKRHKDSHSSNGHTRWSHSPCPTPTPRPYYGPQGSTFDVLSFGAKGNGVSDDSEALLAAWKGACKVAGATVKIPAQLKFLIKPVTLQGPCMPDLTLQIDGTLLAPPEASSWPKSSLFQWINFKWVQNFTIKGSGTVDGQGCNWWSSSEFYDIQVKLPQNHIQAIRFYSSNFVTVRDIRIINSPLCHLKFDNSNGIKVDNITISSPENSPNTDGIHLQNTHDVEIQRSIIETGDDCISIQTGCSNIHVHHINCGPGHGISLGGLGKDKSVACVSDITVEDISMKNTLYGARIKTWQGGIGMVKNVSFSRIQVYEVMFPIMIDQYYCDKQICKNQTGTVVISGVKFDKISGTYGMQPVHLACSNSIPCTDVDLTDIQLSPSAKYRGLQQTVCWNSYGKSQGPLLPSSIDYCLRSGGGLIKRIARSHDRVCY 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1813 502 SUPERFAMILY Pectin lyase-like 104 479 IPR011050 -
Ssu2g1813 502 Gene3D - 102 480 IPR012334 -
Ssu2g1813 502 MobiDBLite consensus disorder prediction 71 96 - -
Ssu2g1813 502 PANTHER - 52 490 - -
Ssu2g1813 502 PANTHER PECTIN LYASE-LIKE SUPERFAMILY PROTEIN 52 490 - -
Ssu2g1813 502 Pfam Glycosyl hydrolases family 28 142 455 IPR000743 GO:0004650|GO:0005975
Ssu2g1813 502 SMART pbh1 345 366 IPR006626 -
Ssu2g1813 502 SMART pbh1 265 291 IPR006626 -
Ssu2g1813 502 SMART pbh1 292 313 IPR006626 -
Ssu2g1813 502 SMART pbh1 315 335 IPR006626 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g1813 Ssu-Chr2 69065588 69068419 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g1813 35 501 Glycoside Hydrolase AT3G26610 59.623 0.0 580
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g1813 K01213 - gmx:100803027 819.305
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g1813 2 69065588 69068419 Ssu2g1813 2 69065588 69068419 ECH