Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1793 ATGGAAGAGTTGGAGCAATGGAAGGAACAGCTTTCTCACTTCTGTCATCTTGCTATGGATCGTCTTCGCGAGGTTCCTCCCAATCAGCTCTACGCTGCTGCCGCCATCGCGATTTTCACAACGCTGCTTCTTCTCGCTGTGAAGTTGTTGAGGCGCGCGAAGTCAAACACCATTGTGTTGACCGGGCTCGGTGGAGGTGGAAAAACTGTTCTGTTCTATCAGCTTAGGGATGGCTCTACTCATCAGGGTACTGTTACATCAATGGAACCTAATGAAGGCACTTTTATTCTTCACAGTGAGAAAACAAGGAAGGGCAAGATAAAACCTGTTCATATTGTTGATGTTCCGGGGCATTCTCGGCTTCGACCCAAATTGGATGAGTTCTTGCCTCAAGCAGCTGGGATAGTTTTTGTGGTTGATGCTTTGGACTTCTTACCAAACTGCCGTGCTGCTTCAGAgtacCTATATGATCTATTGACTAAAGGAAGTGTTGTGAGGAAGAAGATTCCAGTGCTTATTCTCTGCAACAAAACAGACAAAGTCACTGCTCATACAAAAGAGTTTATCCGAAGACAGATGGAGAAAGAAATAGACAAATTACGGACATCAAGAAGTGCAATATCAGCAGCTGACATTGCAAATGAGTTCACCCTGGGGGTACCCGGTGAGCCATTTTCTTTTACCCAGTGCTCTAACAAAGTAACAGCTGCAGATGCTTCTGGTTTAACTGGGGAAATATCTCAGCTGGAGGAGTTTATCAGAGAACATGTAAAGCAATAG 780 0.4474 MEELEQWKEQLSHFCHLAMDRLREVPPNQLYAAAAIAIFTTLLLLAVKLLRRAKSNTIVLTGLGGGGKTVLFYQLRDGSTHQGTVTSMEPNEGTFILHSEKTRKGKIKPVHIVDVPGHSRLRPKLDEFLPQAAGIVFVVDALDFLPNCRAASEYLYDLLTKGSVVRKKIPVLILCNKTDKVTAHTKEFIRRQMEKEIDKLRTSRSAISAADIANEFTLGVPGEPFSFTQCSNKVTAADASGLTGEISQLEEFIREHVKQ 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1793 259 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 58 205 IPR027417 -
Ssu2g1793 259 CDD SR_beta 72 255 IPR019009 -
Ssu2g1793 259 Gene3D - 49 257 IPR027417 -
Ssu2g1793 259 PANTHER TRANSFERRIN 3 258 - -
Ssu2g1793 259 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 3 258 IPR019009 -
Ssu2g1793 259 Pfam Signal recognition particle receptor beta subunit 54 234 IPR019009 -
Ssu2g1793 259 ProSiteProfiles small GTPase Arf family profile. 49 259 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g1793 Ssu-Chr2 68705947 68708249 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g1793 1 258 Miscellaneous Gene Families AT5G05670 72.201 2.79e-139 390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g1793 K12272 - gmx:100800572 459.144
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g1793 2 68705947 68708249 Ssu2g1793 2 68705947 68708249 ECH