Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1768 ATGGCGGATTCCGCCTCTTCCCCCGCAACCCTACCCCCCAACCCCCAACCCTCCGAATCCGCACCCCCCAACCAACCCGATCCACTTCCCCAATCCTCAACGCCACCCCCATCCACGCCGCTCGCCACAAACCCTAATTCCAACCCTGCGTTGCTCCCTCCGCCGCCCGCTCTCCTCTTTCCGGCGGGGACTCCGCCGCAGGTCCCCGGCGTTCTCCCCCCGTCGTTCCGGCCGCTCGCGCCTCAGGTGCCGCAATTCTCCCTCGTCGCCGCGCCGAACCCAGCCTATCAAAACCCTACCGTTCAGCCGCCCGGCGTGGCCGGCGCCGCGCCGCATATGCAACCGATGATGTCGTACCAGGTCCAACCCGGTAACCCGGCCCTGCGACCCTTCGCTCCAATCCCGAACGGTTACGCCGCAGCTCCGCAAGGGATCGTAACTCCCTCGGGAATTCCTCGTTATCCCCCTCCTTATGGAACTATGGTTCGTCCTGTATTTCCTCCGCGCCCTCCTGGAGCAGTTAACATACCTCCAGTATCACGCCCACCTGTTGCAGGGATCCCTGCAGTTCGCCCAATTATTCCTCCTGTTGTCAGACCTGTGGTAGCCCCTAGTGTTACTCCAGCTGAGAAGCATCAAAACACAGTTTACATTGGCAAGATTGCATCAACTGTGGAAAATGAGTTCATGCTCTCTCTCCTTcaaTTGTGTGGAACTATCAAGACCTGGAAACGTCCTCAGGATTTATCAACTGGAACTCCTACAAGTTTTGGGTTTTATGAGTTTGAGTCTGCAGAAGGGGTTCTCCGTGCTTTGCGTCTCCTTACTAAATTGAATATTGATGGGCAAGAACTAAAGgTCAACGTGAATCAAACTATGAAAGAACATCTGGAGCAGTATGTTCAGAAAAAAACAGAGAACTTGAAGAACAAAGAAACTCAGGCAGGAGTAGTTGAAAAAGATAATGAAGGTGCACAACCTTCTAATGCAAACGAGGATGCAAAGGCTGACTCAGAACCCTCTAATAAAGAGGATAATGAATCAGCAAACAAGGAATCCCATGATGTGACAAACTTTGGGATTGTCACTGATGAAGATAGAGAAGCTGATTGTGAGGCTTTAGAAAAGATCACAAAGATGATAGAGGAAAGGTTGAAGACAAGACctttaccaccgccaccacctgCACAGCCAACCGGCGATGGTTCTGTGAATTTAACTTTAGAACAACCTGTTAAAACAAGAGATGGAGACTCTGTTGTGGATACAGAGAAGCATgAATCAGCtggaaataaaaatgagaaagaggCAAACAATGATAACAAACCAACCAGTGAACATGATAGGCCTGAAAGCCCTGATAGAAGGCATGATAGGAAAAGCAGAGAGAGGGACCGAGATAGGGAACTAAAACGAGAGAAGGAAAGAGAACTTGAAAGATATGAAAGAGAAGCAGAGCGGGAACGTGTTCGGAAAGAGAGGGAACAAAGACGAAGGATTGAGGAGGCTGAGCGTCAGTATGAAACATATTTGAAGGATTGGGagtatagagaaagagagagagagaaagaacgCCAGTatgaaaaagagaaggagaaggaaaggGAACGTAAAAGGAGAAAGGAGATACTTTAtgatgaagaggatgaggaTGAGGATTCTAGGAAGAGGTGGCGCAGAAGTGTGCtggaggagaagagaaagaagaggttGCGTGAGAAGGAAGATGACCTGGCTGACAgacaaaaagaagaggaagaaattgCTGAGGCCAAGAAGAAGGCTGAGGAGGAACAGAAGCGGCAAAGAGATGCATTAAAGCTATTATCTGAGCATGTGGCAAATGGTGGTAACGAAAATATGACTACTGAAGAGATTACTAATGAAGTCAAAAGCATTGTTGCTGAACAAGATACTGTAGCTGATTATAGTCGTGAAGATCATATTGGTGACGGTAATTCATTGAATGTCATCAATGATGAATCCACCATAGCATCTGTTGTTCCAACTGATACACAAAGTGGGAATGCTCCTACCAAGAAATTGGGGTTTGGTCTAGTTGGTTCAGGGAAAAGAACAACTGTCCCTTCTGTTTTCCATGAAGAGGAGGATGATGATGCAcacaaggacaaaaaaatgaGGCCATTGGTTCCAATTGATTACTCAACTGAAGAATTGCAGGCTGTTCAACCTACAGTTTCTGGGCCAACACCACCAAATTTGGCTGCTGCTGCAGAATTTGCAAAGCGTATATCCAGTACAAATTTCAAGGAAGAGAAGCTGGATGGAGAACGGGATAGAAGTAGGCGTTCAAATGAGAAGTCTAACCACCGGGACAGGGACAGGGACAGGGACAGGGACAGGGACAGGAGTGATGAAGATGGCACTCACAACAGAGATGAAAACAAGGAGAGAATTCCTGACCGTGACAGGGATCGAGATCATGGTTCAGAGAAACTCAAGACTTCCGATAACAAGAGGCTTTTGGATGCAAAACAATTGATTGATATGATACCAAAGACCAAGGAGGAGTTGTTCTCATATGAGATAGACTGGGCAGTGTATGATAAGCATCAATTACATGAAAGAATGAGACCGTGGATttcaaagaaaatcaaagagTTTTTGGGGGAAGAAGAAAGTACATTGATAGATTATATTGTTTCCAGTACACAAGAACATGTGAAAGCGTCGCAAATGCTTGAGCGTCTTCAGATCATTTTGGATGAAGAGGCTGAAATGTTCGTTCTGAAGATGTGGAGGATGCTTATCTTTGAAATAAAGAAGGTAGAGACAGGGCTAGCTTTGAGgtcaaaatcatga 2823 0.4368 MADSASSPATLPPNPQPSESAPPNQPDPLPQSSTPPPSTPLATNPNSNPALLPPPPALLFPAGTPPQVPGVLPPSFRPLAPQVPQFSLVAAPNPAYQNPTVQPPGVAGAAPHMQPMMSYQVQPGNPALRPFAPIPNGYAAAPQGIVTPSGIPRYPPPYGTMVRPVFPPRPPGAVNIPPVSRPPVAGIPAVRPIIPPVVRPVVAPSVTPAEKHQNTVYIGKIASTVENEFMLSLLQLCGTIKTWKRPQDLSTGTPTSFGFYEFESAEGVLRALRLLTKLNIDGQELKVNVNQTMKEHLEQYVQKKTENLKNKETQAGVVEKDNEGAQPSNANEDAKADSEPSNKEDNESANKESHDVTNFGIVTDEDREADCEALEKITKMIEERLKTRPLPPPPPAQPTGDGSVNLTLEQPVKTRDGDSVVDTEKHESAGNKNEKEANNDNKPTSEHDRPESPDRRHDRKSRERDRDRELKREKERELERYEREAERERVRKEREQRRRIEEAERQYETYLKDWEYREREREKERQYEKEKEKERERKRRKEILYDEEDEDEDSRKRWRRSVLEEKRKKRLREKEDDLADRQKEEEEIAEAKKKAEEEQKRQRDALKLLSEHVANGGNENMTTEEITNEVKSIVAEQDTVADYSREDHIGDGNSLNVINDESTIASVVPTDTQSGNAPTKKLGFGLVGSGKRTTVPSVFHEEEDDDAHKDKKMRPLVPIDYSTEELQAVQPTVSGPTPPNLAAAAEFAKRISSTNFKEEKLDGERDRSRRSNEKSNHRDRDRDRDRDRDRSDEDGTHNRDENKERIPDRDRDRDHGSEKLKTSDNKRLLDAKQLIDMIPKTKEELFSYEIDWAVYDKHQLHERMRPWISKKIKEFLGEEESTLIDYIVSSTQEHVKASQMLERLQIILDEEAEMFVLKMWRMLIFEIKKVETGLALRSKS 940
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1768 940 SMART rrm1_1 215 288 IPR000504 GO:0003723
Ssu2g1768 940 MobiDBLite consensus disorder prediction 382 502 - -
Ssu2g1768 940 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 216 286 IPR000504 GO:0003723
Ssu2g1768 940 SUPERFAMILY RNA-binding domain, RBD 203 293 IPR035979 GO:0003676
Ssu2g1768 940 SUPERFAMILY PWI domain 861 928 IPR036483 GO:0006397
Ssu2g1768 940 MobiDBLite consensus disorder prediction 10 73 - -
Ssu2g1768 940 Gene3D - 206 322 IPR012677 -
Ssu2g1768 940 Pfam PWI domain 863 926 IPR002483 GO:0006397
Ssu2g1768 940 MobiDBLite consensus disorder prediction 668 740 - -
Ssu2g1768 940 SMART pwi_2 856 929 IPR002483 GO:0006397
Ssu2g1768 940 MobiDBLite consensus disorder prediction 336 364 - -
Ssu2g1768 940 PANTHER SPLICING FACTOR PWI DOMAIN-CONTAINING PROTEIN / RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN 1 940 - -
Ssu2g1768 940 MobiDBLite consensus disorder prediction 755 824 - -
Ssu2g1768 940 Gene3D PWI domain 819 935 - -
Ssu2g1768 940 MobiDBLite consensus disorder prediction 570 605 - -
Ssu2g1768 940 Coils Coil 568 612 - -
Ssu2g1768 940 Coils Coil 464 513 - -
Ssu2g1768 940 Coils Coil 294 314 - -
Ssu2g1768 940 MobiDBLite consensus disorder prediction 518 557 - -
Ssu2g1768 940 MobiDBLite consensus disorder prediction 305 364 - -
Ssu2g1768 940 MobiDBLite consensus disorder prediction 415 502 - -
Ssu2g1768 940 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 214 292 IPR000504 GO:0003723
Ssu2g1768 940 MobiDBLite consensus disorder prediction 1 73 - -
Ssu2g1768 940 PANTHER SPLICING FACTOR PWI DOMAIN-CONTAINING PROTEIN / RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN 1 940 - -
Ssu2g1768 940 CDD RRM_RBM25 215 297 IPR034268 -
Ssu2g1768 940 MobiDBLite consensus disorder prediction 696 718 - -
Ssu2g1768 940 Coils Coil 516 544 - -
Ssu2g1768 940 ProSiteProfiles PWI domain profile. 843 940 IPR002483 GO:0006397
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g1768 K12822 - gmx:100809428 1310.05
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g1768 2 68279831 68286024 Ssu2g1768 2 68279831 68286024 ECH