Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1755 ATGCTATGCTCTCTAATCCGTTTCCGCCGTTACGCTTCTCCGCACTCTCCCCTCTCTCTGTTTCCCATTAACCGCTTCTCCTCCGTCGCCGCCATGGTTGCTCACGCGAAGGACGAGGCGTACCTTCACGCGGCGATTCCGAAGCGCATCCGTTTGTTCGAGACTATCCAAGTGGAGCAGCGCACGCAGCGCCTCTCGCTCTCGGCGGATCCTATCAAGGTGACTCTCCCCGACGGCAACGTGAAGGAGGCGAAGAAGTGGCTCACGACTCCGCTCGACGTGGCGCGCGAAATCTCGAAGAATTTGGCCAATAACGCGCTCATCGCGAAGGTCAATGGCGTGCTCTGGGACATGACGAGGCCGCTCGAGGATGATTGCCAGCTTCAGATCTTTAAGTTTGAGGACGACGAGGGGCGCGACACTTTCTGGCACTCCAGCGCGCACATTCTCGGCCAGTCTCTTGAGTCGGAGTATGGATGCAAGCTCTGCATTGGGCCTTGCACCACCAGAGGAGAGGGATTCTATTATGATGCGTTTTACGGTGACTTGGGTCTCAATGACGATCACTTTAAGCAAATTGAGGCTGGAGCATTGAAGGCTGCTGCGGAAAAGCAACCCTTTGAGCGCATTGAAGTTACACGTGATCAGGCACTTGAGATGTTTTCGGATAATAAGTTTAAGGTTGAGATTATCAATGATTTGCCTGCCGACAAAACTATCACGGTATACAGATGTGGTCCCCTGGTTGATTTGTGTCGTGGACCCCATATACCTAATACATCCTTTGTCAAAGCAATTGCATGTTTAAAGGCTTCATCAGCATATTGGAGGGGGGATAAAGATCGGGAAAGTTTACAAAGAGTTTATGGCATATCTTATCCTGATCAGAAGAGTTTAAAGgAATATTTGCATCGATTGGAGGAGGCTAAAAAGTATGATCACAGGGTTTTGGGTGTAAAACAGGAGCTTATTCTTCATCATGAATGGAGTCCCGGAAGTTGGTTTTTTCTTCCACATGGCACTCGGATCTACAACAAACTCATGGAGTTCATTCGAAATCAGTACAGAGACAGGGGCTATCAAGAGGTCATATCTCCAAATGTATTTAACATGGATCTGTGGGTGCAATCTGGTCATGCTGCAAATTACAGAGAGGATATGTTTATCTTAGAGATTGACAAACAAGAGTTTGGGTTGAAACCAATGAATTGCCCTGGGCACTGCCTGATGTTTAAACACAGGGTTCGATCATATAGAGAACTTCCTCTTCGTTTTGCTGATTTTGGGGTTTTGCACCGGAATGAGGCTAGTGGTGCCCTGAGTGGATTAACACGTGTTAGGAGATTTCAGCAGGACGATGCACATATTTTCTGCAGGGAGTCCCAGATAAAGGATGAAGTGAGAAACGCCTTGAATTTCATCAACTATGTCTATGacatatttggtttcacataTGAGCTGAAGCTTTCAACAAGGCCAGAGAAATATTTAGGAGATTTGGCAACTTGGGAGAAAGCTGAAAGTGCTCTTAAAGAAGCTTTAGATGATTTTGGCAAGCCTTGGCAGTTAAATGAAGGGGATGGTGCATTCTATGGACCAAAGATAGACATCAGTGTATCTGATGCATTGAGTAGGAAATTCCAGTGTGCAACTTTGCAGCTTGACTTCCAGCTTCCTGATCGTTTTAAGCTGGAATTTTCAGCTGAGGATGAAGCCAAAATTGAGAGACCTGTAATGATACACAGAGCCATTCTAGGATCTGTTGAACGCATGTTTGCCATACTTTTAGAGCACTACAAGGGTAAATGGCCCTTCTGGCTCAGTCCTCGTCAAGCGATTGTATGCCCTGTGTCTGAAAAATCACAATCTTATGCACTGCAGGTGCGAGATCAGATCCACCAAGCAGGGTATCATGTTGATGCTGATACAACTGATAGGAAGATTCAAAAGAAGGTGCGAGAAGCACAGTTAGCACAATACAACTACATTTTGGTTGTGGGAGAGGAGGAAGCTAATACAGGACAGGTGAGTGTACGAGTTAGAGACAAGGCAGATCATAACGTTATGAGTATCGAGAACCTACTCAAACATTTCAGAGACGAAGTTGCAGCTTTCCGTTGA 2121 0.4597 MLCSLIRFRRYASPHSPLSLFPINRFSSVAAMVAHAKDEAYLHAAIPKRIRLFETIQVEQRTQRLSLSADPIKVTLPDGNVKEAKKWLTTPLDVAREISKNLANNALIAKVNGVLWDMTRPLEDDCQLQIFKFEDDEGRDTFWHSSAHILGQSLESEYGCKLCIGPCTTRGEGFYYDAFYGDLGLNDDHFKQIEAGALKAAAEKQPFERIEVTRDQALEMFSDNKFKVEIINDLPADKTITVYRCGPLVDLCRGPHIPNTSFVKAIACLKASSAYWRGDKDRESLQRVYGISYPDQKSLKEYLHRLEEAKKYDHRVLGVKQELILHHEWSPGSWFFLPHGTRIYNKLMEFIRNQYRDRGYQEVISPNVFNMDLWVQSGHAANYREDMFILEIDKQEFGLKPMNCPGHCLMFKHRVRSYRELPLRFADFGVLHRNEASGALSGLTRVRRFQQDDAHIFCRESQIKDEVRNALNFINYVYDIFGFTYELKLSTRPEKYLGDLATWEKAESALKEALDDFGKPWQLNEGDGAFYGPKIDISVSDALSRKFQCATLQLDFQLPDRFKLEFSAEDEAKIERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSEKSQSYALQVRDQIHQAGYHVDADTTDRKIQKKVREAQLAQYNYILVVGEEEANTGQVSVRVRDKADHNVMSIENLLKHFRDEVAAFR 706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1755 706 CDD ThrRS_anticodon 609 699 - -
Ssu2g1755 706 TIGRFAM thrS: threonine--tRNA ligase 143 701 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Ssu2g1755 706 ProSiteProfiles TGS domain profile. 70 132 IPR004095 -
Ssu2g1755 706 PANTHER THREONINE--TRNA LIGASE, CYTOPLASMIC 35 705 - -
Ssu2g1755 706 SUPERFAMILY Class II aaRS ABD-related 597 702 - -
Ssu2g1755 706 Pfam tRNA synthetase class II core domain (G, H, P, S and T) 393 599 IPR002314 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Ssu2g1755 706 Gene3D Bira Bifunctional Protein; Domain 2 295 602 IPR045864 -
Ssu2g1755 706 SUPERFAMILY Class II aaRS and biotin synthetases 313 596 IPR045864 -
Ssu2g1755 706 CDD TGS_ThrRS 72 137 - -
Ssu2g1755 706 PANTHER THREONINE-TRNA LIGASE 35 705 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Ssu2g1755 706 SUPERFAMILY TGS-like 72 132 IPR012676 -
Ssu2g1755 706 Hamap Threonine--tRNA ligase [thrS]. 137 704 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Ssu2g1755 706 Pfam Threonyl and Alanyl tRNA synthetase second additional domain 240 289 IPR012947 GO:0004812|GO:0005524|GO:0043039
Ssu2g1755 706 Pfam Anticodon binding domain 611 700 IPR004154 -
Ssu2g1755 706 Gene3D - 135 293 - -
Ssu2g1755 706 CDD ThrRS_core 313 609 IPR033728 -
Ssu2g1755 706 SUPERFAMILY ThrRS/AlaRS common domain 134 311 IPR018163 GO:0000166
Ssu2g1755 706 SMART tRNA_SAD_4 240 289 IPR012947 GO:0004812|GO:0005524|GO:0043039
Ssu2g1755 706 Gene3D - 603 705 IPR036621 -
Ssu2g1755 706 Pfam TGS domain 72 132 IPR004095 -
Ssu2g1755 706 ProSiteProfiles Aminoacyl-transfer RNA synthetases class-II family profile. 338 604 IPR006195 -
Ssu2g1755 706 Gene3D - 70 131 IPR012675 -
Ssu2g1755 706 PRINTS Threonyl-tRNA synthetase signature 432 455 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Ssu2g1755 706 PRINTS Threonyl-tRNA synthetase signature 604 616 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Ssu2g1755 706 PRINTS Threonyl-tRNA synthetase signature 399 427 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Ssu2g1755 706 PRINTS Threonyl-tRNA synthetase signature 577 590 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Ssu2g1755 706 PRINTS Threonyl-tRNA synthetase signature 533 561 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g1755 Ssu-Chr2 67880436 67900306 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g1755 K01868 - gmx:100812652 1365.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g1755 2 67880436 67900306 Ssu2g1755 2 67880436 67900306 ECH