Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1702 ATGAGATTAAGAGCACTAAGAAGCTTTCTGTTCCTTTTAACATTATCTTCTCTATTTGTGGATGTATCTGTGTCAATATCTTTTCCACCAGCCATAATAGCCAGACAAATCCCGTTGTGGCTTAGATATATCAAAGCAAACAAATGGATTTCCAGAATCTGGAATACATTTAAGTCACTCTTCAAGTTGAAGGTACTAAAGGTTGGAGAAATAGCCGAGGGGTTGTCCgatgtgaaaaaatatttagaccTCTTCGGTTACTTAAACTCCACTTTACATTCAAACTACAGTGACCATTTCACACTCGATCTCCAATCCGCAGTAATCGAGTTCCAGAAAAACTTCAATCTCAACGTCACGGGGGAGCTAGACCGAAACACTTATAACACCATATCACAGCCACGATGCGGTGTTCCCGACATCATCAACGGCACCACCGCAATGAACTCGGGTAAGTCCAACACGACGTCGTTTACGCCCTGGTGGAAAGAGGGACAGAAAGAACTGACCTATGCTATTCACCCTCAGAACAACGTCACTGACGGCGTCAAACTTTTGTTCCGCGATGCCTTTAACCGGTGGTCGAAGGTCACGTTGTTGAACTTCACGGAGACGACGTCGTTCAATGCCTCGGACATTAGGATAGCGTTCGTGGCGTTCGATGGAGAAGGTGGAGTGGTGGGGGGTGCCGACACAAACTATAGTTTGCGTGTTGGGGGAATATATTTGGACTCAGAGGAGGAGTGGGTGGTGCGTGGTGAGAGCGAAGAGGGTGACGTGGACTTGGAATATGTGGTGATGCACATGGTTGGTCATGTGCTAGGGTTGGGGCATTCCTCTGTTGAAGAGGCTGTTATGTACCCGATCGTGTGGCCGGAAAAGAAGACGGAATTGGCGTACGATGATTTGCAGAGGATTCACCAAATATACGGcctgaaatataaataa 948 0.4525 MRLRALRSFLFLLTLSSLFVDVSVSISFPPAIIARQIPLWLRYIKANKWISRIWNTFKSLFKLKVLKVGEIAEGLSDVKKYLDLFGYLNSTLHSNYSDHFTLDLQSAVIEFQKNFNLNVTGELDRNTYNTISQPRCGVPDIINGTTAMNSGKSNTTSFTPWWKEGQKELTYAIHPQNNVTDGVKLLFRDAFNRWSKVTLLNFTETTSFNASDIRIAFVAFDGEGGVVGGADTNYSLRVGGIYLDSEEEWVVRGESEEGDVDLEYVVMHMVGHVLGLGHSSVEEAVMYPIVWPEKKTELAYDDLQRIHQIYGLKYK 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1702 315 ProSitePatterns Matrixins cysteine switch. 134 141 IPR021158 GO:0004222|GO:0006508|GO:0008270|GO:0031012
Ssu2g1702 315 Gene3D Collagenase (Catalytic Domain) 68 314 IPR024079 GO:0008237
Ssu2g1702 315 SUPERFAMILY Metalloproteases ("zincins"), catalytic domain 160 313 - -
Ssu2g1702 315 SMART col_5 158 312 IPR006026 GO:0006508|GO:0008237|GO:0008270
Ssu2g1702 315 Pfam Putative peptidoglycan binding domain 75 129 IPR002477 -
Ssu2g1702 315 PANTHER MATRIX METALLOPROTEINASE 24 312 - -
Ssu2g1702 315 Pfam Matrixin 165 311 IPR001818 GO:0004222|GO:0006508|GO:0008270|GO:0031012
Ssu2g1702 315 PRINTS Matrixin signature 187 202 IPR021190 GO:0004222|GO:0006508|GO:0008270
Ssu2g1702 315 PRINTS Matrixin signature 298 311 IPR021190 GO:0004222|GO:0006508|GO:0008270
Ssu2g1702 315 PRINTS Matrixin signature 131 144 IPR021190 GO:0004222|GO:0006508|GO:0008270
Ssu2g1702 315 PRINTS Matrixin signature 265 290 IPR021190 GO:0004222|GO:0006508|GO:0008270
Ssu2g1702 315 PANTHER MATRIX METALLOPROTEINASE 24 312 - -
Ssu2g1702 315 SUPERFAMILY PGBD-like 67 141 IPR036365 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g1702 Ssu-Chr2 66370650 66371597 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g1702 - - gmx:100782021 457.603
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g1702 2 66370650 66371597 Ssu2g1702 2 66370650 66371597 ECH