Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1692 ATGAGAACCCATTTTCACTCTCTTCCATTAATTTTGTTCAACCTATCCCTTCTATTGGGCCAATCCAGACCCGACCCTGACCCACTTCAAGACTACTGCGTTGCAGATAACAAAAGCGAATTTTTCATTAATGGTGTGCCTTGCATCAACCCAAAACAAGTTTCCTCGTCCCATTTTGTCACTTCTGCTTTATCCAAGAATGGCAACACTAGTAATGCATTTGGATTCAGTGTCACAGCCACCAACACTGTTAATCTTCCTGGGCTTAACACCTTGGGCCTAGTATTGGTCCGTGTTGATATAGCGGCCAGTGGGATTGTGCCACCTCACTCGCATCCACGGGCCTCGGAAGTGACCACTTGCCTTAGGGGCCTGCTTCTTGTGGGCTTTGTTGACACAAGCAACCGCGTCTTTACCCAGAACTTGAAGCCCGGTGAGTCATTTGTGTTCCCAAAGGGCCTGGTCCATTTTTTGTTCAATCGTGACACAAGGGAACCAGCATTGGCCCTGTCTGGTCTCAACAGCCAGAACCCAGGTGCACAAATAGCATCGCTCGCAACATTCGCTAGCAAACCTCCTATTCCTGATGAAATTCTTAAGAAGGCTTTCCAAATTACCGCCAGAGAAGTGGAAACTATTCGTAGAAACCTTGGAGGATGA 660 0.4742 MRTHFHSLPLILFNLSLLLGQSRPDPDPLQDYCVADNKSEFFINGVPCINPKQVSSSHFVTSALSKNGNTSNAFGFSVTATNTVNLPGLNTLGLVLVRVDIAASGIVPPHSHPRASEVTTCLRGLLLVGFVDTSNRVFTQNLKPGESFVFPKGLVHFLFNRDTREPALALSGLNSQNPGAQIASLATFASKPPIPDEILKKAFQITAREVETIRRNLGG 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1692 219 ProSitePatterns Germin family signature. 105 118 IPR019780 GO:0030145
Ssu2g1692 219 Gene3D Jelly Rolls 24 219 IPR014710 -
Ssu2g1692 219 Pfam Cupin 64 210 IPR006045 -
Ssu2g1692 219 PRINTS Germin signature 140 160 IPR001929 GO:0030145
Ssu2g1692 219 PRINTS Germin signature 110 130 IPR001929 GO:0030145
Ssu2g1692 219 PRINTS Germin signature 174 189 IPR001929 GO:0030145
Ssu2g1692 219 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 1 MEMBER 1 10 218 - -
Ssu2g1692 219 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 10 218 - -
Ssu2g1692 219 SUPERFAMILY RmlC-like cupins 25 216 IPR011051 -
Ssu2g1692 219 SMART Cupin_1_3 62 211 IPR006045 -
Ssu2g1692 219 CDD cupin_OxOx 25 217 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g1692 Ssu-Chr2 66199318 66199977 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g1692 1 218 Miscellaneous Gene Families AT5G39130 42.342 1.66e-53 169
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g1692 - - gmx:100500154 384.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g1692 2 66199318 66199977 Ssu2g1692 2 66199318 66199977 ECH