Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1687 ATGTCTTCCCGGCGCCACTCGCTCGGCGGCCCGCCCCAACTCGCCGGCACCGAGTCGACTCGGAACCTCCGACACCGAGTCATCACGTGCCTCAACAAACTCTCCGACCGCGACACCCTCGCCGGCGCCGCCGCGGAACTCGAGTCCATCGCGCGAACCCTAAGCCACGACTCGTTCTCCTCTTTCCTCTCTTGCATTCACAACACTGACTCTTCATCCAAATCGCTGGTTCGAAAACAATGCGTTTATCTCCTAAACCTTCTCTCGCGCTTCCACGGCGACGctctttctccttttgtttCGAAAATGATTGCTACCGTGCTCCGGCGCCTGCGCGACCCCGACTCCGCCGTGCGATCCGCGTGCGTCGACGCCGTCGCGGCGATGTCGTCTCGGATCACGCGGCCGCCGTTCTCCGCCGCGTTCCTGCGGCCGCTCATGGACGCGCTGGCACAGGAGCAGGACACCAACGCTCAGATCGGCGCCGCGCTCTGCCTCGCGGCGGCGGTGGAGGCGGCGCCGGACCCCGACGCGGAGGCGCTCCGCCGGAGTGCGCTGCCGCGGCTCGGGAAGCTCGTCAAGAGCGACGCGTGTAAGGCGAAGGCGGCGCTGCTGGTGCTGATCGGAAGCGTGGTAGCCGCCGGAGGCGCGGCGAGCCGCGCCGCGATGAACTGGCTCGTGCCGTGCCTCGTCGAGTTCCTCGGCAGCGAGGACTGGACGGTGAGGAAGGCCGCGGCGGAGGCGCTGGCGAAGGTGGCTTCGGTGGAGAGCGATTTAGCGTCGCAGCATAAGGTTCTGTGTTTGGATTCGTTGCAGAATCGGAGGTTCgataagATCAAAGTGGTTCGGGAGACTATGAATCGTGCACTGGAGACATGGAAGGAGGTAACTGAGGATGCTCCTGCTTCGGTTAAGTCTGAATGTGATTCTGTTGGCACAGGTGATGGTAAAGGTCGGTGTGTCACTAAAAGTTCACCCAGTGTTGACTCTAAGTCTTCTTCTAAAACAGTCCCAGCCAATAGGTCCCCTCCATCTGTGGTTTCGTTCATGTCCTCCGTGAAAAGAGAGAGTTCTCTAAAGAGTAATGAGAAGAATTTGAGGATGGGGACATTGCACCAGCAGGATCATGAGAAATCCTCAGATGAGAAACTTGAAACTCCATTTTCGAGGTCCTCCCACTCAAATATGTCTAGGGAAGATGATATTAAAAGGTGTGATTTTGAAGCTTCTAAGCCAACCCCTTATCAAAATGGGGTAAATTCAAGGGCAGAGATAAAGCTTGTTCTCTTTAGCAAGATGTCTGATGAAAAGGTGAAGAGATTCAGTGGTTCGAAATCTCGTGTGGTTCCatgttatgatgatgatgatcttGACACAGATGTTATAGTCAACAATGCAAATGAAGTATGTGAGACTGAGAGCCCACAAGATGTTGAGGATTTTTCTTTGATCCGTGAACAACTTATTCAAATTGAAAACCAACAATCAAATCTATTAGACCTCCTCCAGaGATTTATTGGAAGCTCCCAAAGTGGTTTGAATTCTCTGGAATCACGTGTACATGGCCTAGAGATGGCCCTGGATGAAATATCATACGATTTGGCACTTTCAAGTGGCAGGATTTCCAATACTGATGCCACAGAAGACATGTGTTGCAAGCTACCTGGTACTGACTTTTTGAGTTCTAAATTCTGGAAGAGAACAGAAGGTCGGTATTCCACATCAAGGTTCTCTTTAGGAAGCATAGCATCAACAAATGCTGTGCATAATGCAACCAATAATgatggaaggaaagaaatattaaCTGCAAATAACAAAAGATTGCAGCATGGTAAGGGTGGATATTTTGTAAACCCATTGGCCGAAGTTCAAAGCGATTTGAAGGGGCTTTTAGGGCATCAAACAGATAAAATGCCTAAAAACATGGTCCACGATGTTGAGAGATCACAAAATAGCAGATACGATGGCATTCAATCAGCTAGTGAAGCACTGAGGAACCAGAATATCCGGTCATCTGTGTAG 2022 0.5054 MSSRRHSLGGPPQLAGTESTRNLRHRVITCLNKLSDRDTLAGAAAELESIARTLSHDSFSSFLSCIHNTDSSSKSLVRKQCVYLLNLLSRFHGDALSPFVSKMIATVLRRLRDPDSAVRSACVDAVAAMSSRITRPPFSAAFLRPLMDALAQEQDTNAQIGAALCLAAAVEAAPDPDAEALRRSALPRLGKLVKSDACKAKAALLVLIGSVVAAGGAASRAAMNWLVPCLVEFLGSEDWTVRKAAAEALAKVASVESDLASQHKVLCLDSLQNRRFDKIKVVRETMNRALETWKEVTEDAPASVKSECDSVGTGDGKGRCVTKSSPSVDSKSSSKTVPANRSPPSVVSFMSSVKRESSLKSNEKNLRMGTLHQQDHEKSSDEKLETPFSRSSHSNMSREDDIKRCDFEASKPTPYQNGVNSRAEIKLVLFSKMSDEKVKRFSGSKSRVVPCYDDDDLDTDVIVNNANEVCETESPQDVEDFSLIREQLIQIENQQSNLLDLLQRFIGSSQSGLNSLESRVHGLEMALDEISYDLALSSGRISNTDATEDMCCKLPGTDFLSSKFWKRTEGRYSTSRFSLGSIASTNAVHNATNNDGRKEILTANNKRLQHGKGGYFVNPLAEVQSDLKGLLGHQTDKMPKNMVHDVERSQNSRYDGIQSASEALRNQNIRSSV 673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1687 673 MobiDBLite consensus disorder prediction 323 356 - -
Ssu2g1687 673 Pfam HEAT repeat 226 254 IPR000357 GO:0005515
Ssu2g1687 673 MobiDBLite consensus disorder prediction 647 673 - -
Ssu2g1687 673 ProSiteProfiles HEAT repeat profile. 226 264 IPR021133 -
Ssu2g1687 673 Coils Coil 484 504 - -
Ssu2g1687 673 SUPERFAMILY ARM repeat 23 296 IPR016024 -
Ssu2g1687 673 MobiDBLite consensus disorder prediction 369 400 - -
Ssu2g1687 673 MobiDBLite consensus disorder prediction 301 400 - -
Ssu2g1687 673 Gene3D - 13 373 IPR011989 -
Ssu2g1687 673 PANTHER TORTIFOLIA1-LIKE PROTEIN 4 3 660 - -
Ssu2g1687 673 MobiDBLite consensus disorder prediction 652 673 - -
Ssu2g1687 673 PANTHER MICROTUBULE-ASSOCIATED PROTEIN TORTIFOLIA1 3 660 IPR033337 GO:0005874|GO:0008017
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g1687 Ssu-Chr2 66088241 66092158 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g1687 - - gmx:100781440 1037.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g1687 2 66088241 66092158 Ssu2g1687 2 66088241 66092158 ECH