Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1622 ATGAGCTCTGGTGGGTACGCTGTAGAGGTTATGGGTCTCTCGCCAAAAGCCACGGACAAGGATGTCCGTGACTTCTTTGCTTTCTCTGGTGTCATTGAGCATGTTGAAATTATCGGGTCTGGTGATTATGCCTGTACTGCTTATGTGACGTTCAaagatgcatatgctcaagaaACTGCATGCTTGCTCAGTGGAGCCACTATTTTAGATCAACGTGTATGCATAACACGCTGGGGGCACTACgaagatgaatttgatttttggaACAGGCCCTCCTATAGTCATGAGGACGAGGCTGCTTCAACTGCACCACAAAGCAGTCAATTTGTTTCCTCTGCTGGAGAAGCAGTTACCATGGCTCAAGAAGTCGTTAAGACCATGCTAGCAAAGGGATATGTTCTCAGCAAGGATGCGCTAGCTAAGGCTAAGGACTTTGACGAGTCTCATCAGGTTTCTGCCACCGCAACAGCAAAGGTTTCTGAACTGAGCCAGAGAATTGGCCTCACAGATAAGATATCTGCAGGTATTGGAGCTGTTAAATCTGTGGATCAGAGATATAATGTCTCTGAAACAACCAAGGCGGCCGCATCCACAGCAGGAAAATCAGTAGCAGCGGCTGCAAGCTCTTTGGTAAATAGCAGCTATTTTTCAAAAGGAGCCTTGTGGGTGTCAGGTGCTCTAACCAGAGCATCTCAAGTTGCTTCTGATTTGGGTACTCGCAGGGATAGGCAGTAA 735 0.4517 MSSGGYAVEVMGLSPKATDKDVRDFFAFSGVIEHVEIIGSGDYACTAYVTFKDAYAQETACLLSGATILDQRVCITRWGHYEDEFDFWNRPSYSHEDEAASTAPQSSQFVSSAGEAVTMAQEVVKTMLAKGYVLSKDALAKAKDFDESHQVSATATAKVSELSQRIGLTDKISAGIGAVKSVDQRYNVSETTKAAASTAGKSVAAAASSLVNSSYFSKGALWVSGALTRASQVASDLGTRRDRQ 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1622 244 Gene3D - 6 80 IPR012677 -
Ssu2g1622 244 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 1 244 - -
Ssu2g1622 244 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 10 70 IPR000504 GO:0003723
Ssu2g1622 244 SUPERFAMILY RNA-binding domain, RBD 8 81 IPR035979 GO:0003676
Ssu2g1622 244 SMART rrm1_1 7 77 IPR000504 GO:0003723
Ssu2g1622 244 CDD RRM_Vip1_like 8 76 IPR034360 -
Ssu2g1622 244 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 1 244 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g1622 Ssu-Chr2 64670669 64672955 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g1622 - - gsj:114378905 419.853
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g1622 2 64670669 64672955 Ssu2g1622 2 64670669 64672955 ECH