Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1609 ATGAGTAACCAGAAAAGGTGGAATTTTCAGATAGAAGCGTTCAAGCACAAGGTAGGCATTGATCCCAAATATGCCGACAAGACATGGAACTTTCTGGAACACGCAATTCATGAGATATACAACCACAATGCTAGTGGTCTCAGTTTTGAAGAGCTTTACAGGAATGCATACAATATGGTCCTTCACAAATTTGGTGAGAAGCTATACTCAGGGCTGGTTTCCACCATGACTGCTCATCTCAAAGAGATAGCTAGATCTATTGAAGCCACTCCAGGAGGTTTCTTTCTGGAAGAAATGAACAGGAAATGGAATGATCATAGTGAGGCATTACAAATGATTAGAGACATTCTTATGTACATGGATAGGACTTACATCCCAAAAGCCAGGGAAACTCCTGTTCGTGAACTTGGCCTGAACCTGTGGAgagaaaatgttatatattcaaAACAGATAAGGACCCAACTGTTGAATACACTTGTGGAATTGGTGTGCAGGGAACGTGATGGTGAAGTTATTAATAGAGGACTGTTTAGAAATATAACGAAGATGCTAATGGAATTAGGTCCTTCCATTTATGGGCAAGAATTTGAGACTCATTTTCTTCAAGTTTCAGTTGAGTTCTACCGGGCAGAATCACAGAAGTTTACTGAGTGCTGTGCTTGTGGGGATTATCTGAAGAAAGCTGAGAGGTGTCTGAATGAGGAAATAGATAGAGTGAGTCATTACTTGGATCCCAGGACTGAAAAGAAGATTATTAATGTGGTAGAGAAGGAGATGATTGAAAATCACATGcttatattaatacatatggAGAATTCCGGGTTAATAAGCATGCTTTGTGGTAATAAATATGAAGATTTGGGTAGAATGTATAACTTGTTCTGTCGTGTTACTGAAGGTCTCTCAAAAATATGCGAAGTGATGACTTCACACATTAGAGAGTCTGGTAAGCAGCTTGTCATGGATCCTGAAAGGTTGAAGGATCCTGTTGAATTTGTGCAGAGGCTCCTAGATGAGAAAGATAAGTATGACAAGATTATAAATGTGTCATTTAATAACGATAAGTTGTTCCAGAAGGCTTTGAATTCCTCATTTGAATACTTCATTTACTTGAATCCCCGTTCTCCAGAGTTCATTTCACTCTTTTTAGATGACAAGCTTCGTAAAGGTCTCAAGGGAGTCAGTGAGGAGGATGTAGAGATTACTCTTGACCAGGTGATGATGTTATTCCAGTACTTGCAAGAAAAAGACGTGTTTGAGAAGTATTACAAACAGCATCTGGCAAAACGGCTTTTGTCTGGAAAAACAGTTTCTGATGATGCAGAAAGAAGTCTCATAGTTAAGCTCAAGACCGAATGCGGTTATCAGTTCACCTCCAAGTTAGAGGGCATGCTTACAGACATGAAAACATCTCTAGATACAATGCAGGGCTTTTATGCCAACCACCCCGAGTTAAGCGACAGTCCTACACTTACTGTGCAGGTTTTGACAACAGGGTCTTGGCCTACTCAGTCTACTGTTACATGTAACTTACCAGCTGAAATGTCTGCACTTTGTGAGAAATTTCGATCATATTACCTCAGCACGCATACTGGCAGGAGATTGTCCTGGCAAACTAATATGGGCACAGCAGACTTAAAAGCCACATTTGGTAAAGGTCAGAAGCATGAGTTGAATGTCTCCACTTATCAAATGTGTGTCCTCATGCTGTTTAACAATGCTGATAGACTAAGCTACAAGGAAATTGAGCAAGCAACTGAGATTCCGGCATCGGATCTGAAGAGGTGCCTCCAATCATTGGCTTTAGTTAAGGGAAGAAATGTACTTAGGAAGGAGCCTACGAGTAAAGATGTAGGTGAGGATGATGTTTTCTTTGTTAATGACAAGTTTAGTAGCAAACTATACAAGGTGAAAATAGGTACTGTAGCTGCACAAAGGGAATCAGAACCTGAGAAACTGGAAACCCGACACCGAGTGGAGGAGGACCGGAAGCCCCAGATTGAGGCTGCCATAGTGAGGATGATGAAATCAAGGAAGCAACTTGATCATACCAATCTCATAGCTGAGGTCACAAACCAGTTGCAGTTGCGGTTCCTCGCAAATCCAAGAGAGGTAAAGAAACGGATTGAGTCTCTCATTGAGCGGGATTTTTTGGAAAGAGATGATAGTGACAGAAAGCTATATCGATATCTTACCTAG 2199 0.4043 MSNQKRWNFQIEAFKHKVGIDPKYADKTWNFLEHAIHEIYNHNASGLSFEELYRNAYNMVLHKFGEKLYSGLVSTMTAHLKEIARSIEATPGGFFLEEMNRKWNDHSEALQMIRDILMYMDRTYIPKARETPVRELGLNLWRENVIYSKQIRTQLLNTLVELVCRERDGEVINRGLFRNITKMLMELGPSIYGQEFETHFLQVSVEFYRAESQKFTECCACGDYLKKAERCLNEEIDRVSHYLDPRTEKKIINVVEKEMIENHMLILIHMENSGLISMLCGNKYEDLGRMYNLFCRVTEGLSKICEVMTSHIRESGKQLVMDPERLKDPVEFVQRLLDEKDKYDKIINVSFNNDKLFQKALNSSFEYFIYLNPRSPEFISLFLDDKLRKGLKGVSEEDVEITLDQVMMLFQYLQEKDVFEKYYKQHLAKRLLSGKTVSDDAERSLIVKLKTECGYQFTSKLEGMLTDMKTSLDTMQGFYANHPELSDSPTLTVQVLTTGSWPTQSTVTCNLPAEMSALCEKFRSYYLSTHTGRRLSWQTNMGTADLKATFGKGQKHELNVSTYQMCVLMLFNNADRLSYKEIEQATEIPASDLKRCLQSLALVKGRNVLRKEPTSKDVGEDDVFFVNDKFSSKLYKVKIGTVAAQRESEPEKLETRHRVEEDRKPQIEAAIVRMMKSRKQLDHTNLIAEVTNQLQLRFLANPREVKKRIESLIERDFLERDDSDRKLYRYLT 732
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1609 732 Gene3D Cullin Repeats 265 372 - -
Ssu2g1609 732 Gene3D Cullin Repeats 145 264 - -
Ssu2g1609 732 SUPERFAMILY Cullin repeat-like 22 369 IPR016159 -
Ssu2g1609 732 ProSiteProfiles Cullin family profile. 374 601 IPR016158 -
Ssu2g1609 732 Gene3D Cullin; Chain C, Domain 2 488 643 - -
Ssu2g1609 732 SMART cul_2 404 550 IPR016158 -
Ssu2g1609 732 SMART Cullin_Nedd8_2 659 726 IPR019559 -
Ssu2g1609 732 Gene3D - 644 732 IPR036388 -
Ssu2g1609 732 PANTHER CULLIN 3 731 IPR045093 -
Ssu2g1609 732 Pfam Cullin protein neddylation domain 662 724 IPR019559 -
Ssu2g1609 732 Gene3D Cullin Repeats 15 143 - -
Ssu2g1609 732 SUPERFAMILY "Winged helix" DNA-binding domain 644 731 IPR036390 -
Ssu2g1609 732 PANTHER CULLIN-3A-RELATED 3 731 - -
Ssu2g1609 732 SUPERFAMILY Cullin homology domain 371 640 IPR036317 -
Ssu2g1609 732 Pfam Cullin family 29 630 IPR001373 GO:0006511|GO:0031625
Ssu2g1609 732 Gene3D Cullin Repeats 373 484 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g1609 Ssu-Chr2 64306483 64310121 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g1609 K03869 - gmx:100794520 1290.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g1609 2 64306483 64310121 Ssu2g1609 2 64306483 64310121 ECH