Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1608 ATGGGCACTACCCTGATGAGATGCTCCCACGCCAACATTCTCTTCAGAGCTCTCAAACCCAAACCCTGCAATTCGCTGCCACTTTCTTCAATGCCCATCAACAAAGGTACTTGTGAGAAGACATATGATGCATTGCTGTTGGATGCTGGGGGCACCCTTTTGCAATTGTCAAAGCCAGTTGAGGAGACTTATGCCGCTATTGGATCCAAATATGGTGTGACTGTGGATCCAGCTGCGATAAAGCAAGGATTTAAAAGAGCATTTGCTGCTCCGTGGCCGGAAAAGCTACGTTACCAGGGAGATGGGAGGCCATTTTGGAAACTTGTAGTTTCTGAAGCCACTGGTTGTGGAGATGAAGATTATTTTGAGGAAGTTTATGAGTACTATGCAAAAGGTGATGCGTGGCATCTTCCAGATAGAGCTTTTGAAACAATAACTGTTCTCAAGGATGCTGGAGTTAAGATGGCTGTTGTATCCAATTTTGACTACCGCTTAAGGAAGCTTTTGAAGGATCTTAATGTTTTAAATCTGTTTGACGCTGTCATTATATCATCAGAGGTTGGATATGAAAAACCAGATCCAAGAATATTCCAAGCTGCTCTAGATCAAGTAAATGTAGAGGCTTGCAAAGCCTTACACATTGGAGATGATCAAAAGGCAGATAAAATGGGGGCCAATGCTGTGGGGATTGATTGCTGGTTATGGGGTATTGATGTGAAGACGTTCTCTGATATACAAATCCGCATCCTCAATTCAGGGGCGTGA 765 0.4366 MGTTLMRCSHANILFRALKPKPCNSLPLSSMPINKGTCEKTYDALLLDAGGTLLQLSKPVEETYAAIGSKYGVTVDPAAIKQGFKRAFAAPWPEKLRYQGDGRPFWKLVVSEATGCGDEDYFEEVYEYYAKGDAWHLPDRAFETITVLKDAGVKMAVVSNFDYRLRKLLKDLNVLNLFDAVIISSEVGYEKPDPRIFQAALDQVNVEACKALHIGDDQKADKMGANAVGIDCWLWGIDVKTFSDIQIRILNSGA 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1608 254 PRINTS Haloacid dehalogenase/epoxide hydrolase family signature 196 216 IPR006439 -
Ssu2g1608 254 PRINTS Haloacid dehalogenase/epoxide hydrolase family signature 42 53 IPR006439 -
Ssu2g1608 254 PRINTS Haloacid dehalogenase/epoxide hydrolase family signature 148 161 IPR006439 -
Ssu2g1608 254 PRINTS Haloacid dehalogenase/epoxide hydrolase family signature 178 194 IPR006439 -
Ssu2g1608 254 Pfam Haloacid dehalogenase-like hydrolase 119 232 IPR041492 -
Ssu2g1608 254 SUPERFAMILY HAD-like 42 235 IPR036412 -
Ssu2g1608 254 TIGRFAM DREG-2: HAD hydrolase, REG-2-like, family IA 45 234 IPR011949 -
Ssu2g1608 254 SFLD C1.5: HAD, Beta-PGM, Phosphatase Like 42 234 - -
Ssu2g1608 254 CDD HAD_dREG-2_like 141 251 - -
Ssu2g1608 254 Gene3D - 58 130 IPR044924 -
Ssu2g1608 254 PANTHER F14L17.7 PROTEIN 1 252 - -
Ssu2g1608 254 SFLD Haloacid Dehalogenase 42 234 - -
Ssu2g1608 254 TIGRFAM HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 147 229 IPR006439 -
Ssu2g1608 254 Gene3D - 46 234 IPR023214 -
Ssu2g1608 254 PANTHER - 1 252 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g1608 Ssu-Chr2 64299148 64302610 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g1608 - - gmx:100306694 455.677
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g1608 2 64299148 64302610 Ssu2g1608 2 64299148 64302610 ECH