Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1398 ATGGATGAATTTGGTAATAAAGTTCAAGGTGACTTTTATGTTGTAGATGCAGCTTTTGGGAAACCCTACTCACTCCAGGGGTTCTCAACTAAAGAAAATGATGTGCAAGAATTGGAGATATCCCTGCAAGCTTTAACAGAAATAGACTATCGCTTAGCCTATTTTTCTGAGAAGCTGGTGAACTTGCATGtgctttatatttatctattggCCGAGGAAAGTGATCTTGAAGCAATGGATTCAAAGAATAACTGCATCTTGGCAAACTCATTTGAGAAGGCAATGACATTTGATCTATTGTCTGGCATTTTAGATTCTGAGGTAAGAGAGCTAGGCAATTTCATGGACACTCTCCAAGAAGAAATTGTTGATGctcatcataaaatattttcatgcaAACATTTGACTGAGGTTTTCTTTATGATGGACAAAAAATTGCATGACTCTGAAGAGTCTGTGAAGCAGTTTCAACAGCAGTTATTGGAGTTGAAAATGCAATCATTCCAGTTACAGAAAACCATTGAGGCTTTTCGACACGAGAATTGCGAAATGGGGAAGGTCTTGAATTTATCAGGAATTGGTCAACTGACAGATGGGAAAGCAAAATCCAACTATCAGATGGTTGAACAACGAAGATATATTTTGCGAATGCTTGAGAAATCTCTTGCAAGGGAGCTAGAACTTGAAAGGAAGTTAGCAGAGTCAAGAAATAATGAAGAGCTAAAGTTGAAACTCCGCTACACAGAACAAGTGGCATTTTATATGGAAGAAGCAGCAGAAGTAGTTTGGGGAAGATTTCTAGAGGCAGACAATATTGCGGAGGTGTTAATGGGGATTTCTAAAGGTATAATGGGACGCCTTCAAGTATCTGAGTTCAACCTCAATGGTTCTATGCAACGAGACAATGAGCTGagatcaaaaattcaaaatttgatagaGCAACTCAAGGCTAAAGATGCTGCTTTAGAGAAGCTCGAGACATGTAATGTTGAAAGTACAAAGGAAAAATCTGAGGTGTTGTCTTTGAGGGAAAAGGTGAAATTTCTTGAGGAAGAGCGAAAAGACTTTGAGCTGCAGATAAATAATGTGATTGCAGAGAATGAAGCATGTCATGAGAAACTAATTGAAATGGAAAATTTTGTCGAATCTTTGAAAGAAAGCATTGACATAATAGAAAATCGGGCCGAAAGCGCAGAAGCAAAGGTTACACAGTTATCCGAGACCAACTTGGAACTTACTGAAGAGCTGAATTTTCTTAAAGGGAGCACTAGTAATGCAGAGAAAAAGGTTGGTTCACTTGAGAAGCAGCTAAGGGAATTAGATATCCAACTACAGAATGCAAAGGCTTCTTCTGAAGCAAGTCAAGAACAGCAGAACATGTTATACACAGCTATATGGGATATGGAAATATTGATTGAAGAGCTAAAATCAAAGGTTTCAAAAGCTGAAAGTAATAAAGAAATTGCTGTTGAGCAATGCTTTGAGCTATCTGAAACTAACTTAGAACTTAATAAAGAATTGGATCTCCTTAGATCCAGAACAATAAGCTTGAAAACATCTTTGGATCAAGCTAGCAATACAAAATTATCAAGGGCAAAAGAAATTGATACTAAAATGAAGCTTGTCATGGATACGGTAACACAACTAGCCTCTGAAAGAGAGCGCATCAATAACCAGTTAGTTGCTTTAAAACAGGAAAATAAACATTTggtacaaaaattaaagaatactaAAATTGATGCCCCTTTAGATGCATGCAACAATGGGCTAAATAACAGAAATGAAGATCAATCTTCCAACAATGACTCGAGCAATGATAGCTGTGCTAaatcatcagatgaagaaggaatATATCACTTTAATAAGACCTTTCAGGCAGGTTGA 1884 0.3551 MDEFGNKVQGDFYVVDAAFGKPYSLQGFSTKENDVQELEISLQALTEIDYRLAYFSEKLVNLHVLYIYLLAEESDLEAMDSKNNCILANSFEKAMTFDLLSGILDSEVRELGNFMDTLQEEIVDAHHKIFSCKHLTEVFFMMDKKLHDSEESVKQFQQQLLELKMQSFQLQKTIEAFRHENCEMGKVLNLSGIGQLTDGKAKSNYQMVEQRRYILRMLEKSLARELELERKLAESRNNEELKLKLRYTEQVAFYMEEAAEVVWGRFLEADNIAEVLMGISKGIMGRLQVSEFNLNGSMQRDNELRSKIQNLIEQLKAKDAALEKLETCNVESTKEKSEVLSLREKVKFLEEERKDFELQINNVIAENEACHEKLIEMENFVESLKESIDIIENRAESAEAKVTQLSETNLELTEELNFLKGSTSNAEKKVGSLEKQLRELDIQLQNAKASSEASQEQQNMLYTAIWDMEILIEELKSKVSKAESNKEIAVEQCFELSETNLELNKELDLLRSRTISLKTSLDQASNTKLSRAKEIDTKMKLVMDTVTQLASERERINNQLVALKQENKHLVQKLKNTKIDAPLDACNNGLNNRNEDQSSNNDSSNDSCAKSSDEEGIYHFNKTFQAG 627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1398 627 Coils Coil 218 243 - -
Ssu2g1398 627 MobiDBLite consensus disorder prediction 588 612 - -
Ssu2g1398 627 Coils Coil 546 580 - -
Ssu2g1398 627 Coils Coil 146 166 - -
Ssu2g1398 627 MobiDBLite consensus disorder prediction 588 607 - -
Ssu2g1398 627 Gene3D - 360 511 - -
Ssu2g1398 627 Coils Coil 332 366 - -
Ssu2g1398 627 SUPERFAMILY Tropomyosin 316 571 - -
Ssu2g1398 627 Coils Coil 298 328 - -
Ssu2g1398 627 PANTHER WPP DOMAIN-INTERACTING TAIL-ANCHORED PROTEIN 1 12 625 IPR039976 -
Ssu2g1398 627 Coils Coil 465 492 - -
Ssu2g1398 627 PANTHER WPP DOMAIN-INTERACTING TAIL-ANCHORED PROTEIN 2 12 625 - -
Ssu2g1398 627 Coils Coil 423 457 - -
Ssu2g1398 627 Coils Coil 374 415 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g1398 Ssu-Chr2 58306916 58311079 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g1398 - - gmx:100784341 1007.67
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g1398 2 58306916 58311079 Ssu2g1398 2 58306916 58311079 ECH